YRC Public Data Repository - Protein Structure Prediction

Protein:	PINR_ECOLI
Organism:	Escherichia coli
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PINR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218561602, gi... - gi\|218561602\|ref\|YP_002394515.1\| putative site-specific recombinase; DNA invertase; Rac prophage [Es... gi\|115515855, gi... - gi\|117626731\|ref\|YP_860054.1\| Rac prophage; site-specific recombinase [Escherichia coli APEC O1], gi... gi\|157066701, gi... - gi\|157161021\|ref\|YP_001458339.1\| site-specific recombinase resolvase family protein PinR [Escherichi...	176.0	[0..1]	[196..1]
gi\|1742545, gi\|8... - gi\|89108386\|ref\|AP_002166.1\| predicted site-specific recombinase [Escherichia coli str. K-12 substr.... gi\|238863391, gi... - gi\|238900765\|ref\|YP_002926561.1\| Qin prophage; putative site-specific recombinase [Escherichia coli ... EG13824 - Qin prophage; putative site-specific recombinase / Predicted DNA-invertase, Qin prophage EG13824 - Qin prophage; putative site-specific recombinase / Predicted DNA-invertase, Qin prophage gi\|194436552, gi... - gi\|194436552\|ref\|ZP_03068653.1\| site-specific recombinase resolvase family protein PinR [Escherichia... PINQ_ECOLI - Putative DNA-invertase from lambdoid prophage Qin - Escherichia coli gi\|169889047, gi... - gi\|170081212\|ref\|YP_001730532.1\| Qin prophage; site-specific recombinase [Escherichia coli str. K-12...	175.0	[0..1]	[196..1]
gi\|114707895, gi... - gi\|114707895\|ref\|ZP_01440788.1\| Transposon Tn2501 resolvase [Fulvimarina pelagi HTCC2506], gi\|114536...	172.0	[0..1]	[193..37]
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	171.0	[0..3]	[189..1]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	171.0	[0..3]	[189..1]
gi\|10956179, gi\|... - gi\|8574414\|emb\|CAB94805.1\| resolvase/integrase [Staphylococcus haemolyticus], ref\|NP_059858.1\| resol...	171.0	[0..3]	[194..1]
gi\|49483990, gi\|... - gi\|49483990\|ref\|YP_041214.1\| resolvase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49242119\|em... gi\|221141712 - gi\|221141712\|ref\|ZP_03566205.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|221138408 - gi\|221138408\|ref\|ZP_03563210.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi\|22476847 - gi\|22476847\|gb\|AAM97336.1\|AF426834_2 resolvase/integrase BinL [Staphylococcus epidermidis] gi\|421394 - gi\|421394\|pir\|\|S11781 DNA-invertase - Staphylococcus aureus transposon Tn552 gi\|227245678, gi... - gi\|227557942\|ref\|ZP_03987989.1\| recombinase [Staphylococcus aureus subsp. aureus MN8], gi\|227245678\|...	171.0	[0..3]	[194..1]
gi\|66862675, gi\|... - gi\|66968593\|ref\|YP_245470.1\| putative DNA invertase [Pseudomonas aeruginosa], gi\|66862675\|emb\|CAI469...	170.0	[0..3]	[189..1]
gi\|19352370, gi\|... - gi\|19352370\|ref\|NP_598128.1\| invertase-like protein [uncultured bacterium], gi\|19352365\|ref\|NP_59812...	169.0	[0..3]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIFAYCRI STLDQTTENQ RREIESAGFK IKPQQIIEEH ISGSAATSER PGFNRLLARL  60
   61 KCGDQLIVTK LDRLGCNAMD IRKTVEQLTE TGIRVHCLAL GGIDLTSPTG KMMMQVISAV 120
  121 AEFERDLLLE RTHSGIVRAR GAGKRFGRPP VLNEEQKQVV FERIKSGVSI SAIAREFKTS 180
  181 RQTILRAKAK LQTPDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	2gm4A
Description:	No description for 2gm4A was found.

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: