YRC Public Data Repository - Protein Structure Prediction

Protein:	PINH_ECOLI
Organism:	Escherichia coli
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PINH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75257688, gi\|... - gi\|75257688\|ref\|ZP_00729179.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Esch...	97.0	[0..1]	[75..38]
gi\|96897, gi\|912428 - pir\|\|E42463 DNA-invertase - Shigella boydii, gi\|912428\|dbj\|BAA00556.1\| site-specific recombinase [S... gi\|912428 - gi\|912428\|dbj\|BAA00556.1\| site-specific recombinase [Shigella sonnei]	97.0	[0..1]	[75..38]
gi\|188495893, gi... - gi\|75512031\|ref\|ZP_00734626.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Esch...	96.0	[0..1]	[75..38]
gi\|96088, gi\|42225 - pir\|\|S18680 DNA-invertase - Escherichia coli plasmid p15B, gi\|42225\|emb\|CAA44043.1\| Min [Escherichia...	96.0	[0..1]	[75..38]
gi\|213417285 - gi\|213417285\|ref\|ZP_03350429.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|16502732, gi\|... - gi\|25300484\|pir\|\|AH0689 DNA-invertase [imported] - Salmonella enterica subsp. enterica serovar Typhi... gi\|29137431, gi\|... - gi\|29141803\|ref\|NP_805145.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|16760437 - gi\|16760437\|ref\|NP_456054.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str. C...	96.0	[0..1]	[75..38]
gi\|82543895, gi\|... - gi\|82543895\|ref\|YP_407842.1\| putative DNA-invertase [Shigella boydii Sb227], gi\|81245306\|gb\|ABB66014...	96.0	[0..1]	[75..38]
gi\|194438246, gi... - gi\|83586329\|ref\|ZP_00924964.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Esch...	96.0	[0..1]	[75..38]
gi\|110609467, gi... - gi\|114570053\|ref\|YP_756733.1\| resolvase [Maricaulis maris MCS10], gi\|114340515\|gb\|ABI65795.1\| Resolv...	96.0	[0..1]	[69..38]
gi\|91209950, gi\|... - gi\|91209950\|ref\|YP_539936.1\| putative DNA-invertase [Escherichia coli UTI89], gi\|91071524\|gb\|ABE0640... gi\|283785681\|ref... - phage DNA-invertase [Citrobacter rodentium ICC168], phage DNA invertase [Citrobacter rodentium ICC16...	96.0	[0..1]	[75..38]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRGRRSGLKK LVRTSSAGNA LLVCKLNRLG RSMWHLVVLL EELCERGINF RALAQSIFAQ  60
   61 QWGDECCKSK TICDLKVIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	2gm4A
Description:	No description for 2gm4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits