YRC Public Data Repository - Protein Structure Prediction

Protein:	PHSG_ECOLI
Organism:	Escherichia coli
Length:	815 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHSG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74314031, gi\|... - gi\|74314031\|ref\|YP_312450.1\| glycogen phosphorylase [Shigella sonnei Ss046], gi\|73857508\|gb\|AAZ90215...	1215.0	[0..1]	[815..1]
gi\|115514826, gi... - gi\|117625702\|ref\|YP_859025.1\| glycogen phosphorylase GlgP [Escherichia coli APEC O1], gi\|115514826\|g... gi\|227883571, gi... - gi\|227883571\|ref\|ZP_04001376.1\| glycogen phosphorylase [Escherichia coli 83972], gi\|227839450\|gb\|EEJ... gi\|218560493, gi... - gi\|218560493\|ref\|YP_002393406.1\| glycogen phosphorylase [Escherichia coli S88], gi\|218367262\|emb\|CAR... gi\|218691717, gi... - gi\|218691717\|ref\|YP_002399929.1\| glycogen phosphorylase [Escherichia coli ED1a], gi\|218429281\|emb\|CA... gi\|110643669, gi... - gi\|110643669\|ref\|YP_671399.1\| glycogen phosphorylase [Escherichia coli 536], gi\|110345261\|gb\|ABG7149... gi\|191171573, gi... - gi\|191171573\|ref\|ZP_03033121.1\| glycogen phosphorylase [Escherichia coli F11], gi\|190908200\|gb\|EDV67... gi\|91212911, gi\|... - gi\|91212911\|ref\|YP_542897.1\| glycogen phosphorylase [Escherichia coli UTI89], gi\|91074485\|gb\|ABE0936... gi\|215266781, gi... - gi\|215488709\|ref\|YP_002331140.1\| glycogen phosphorylase [Escherichia coli O127:H6 str. E2348/69], gi... gi\|237703168, gi... - gi\|237703168\|ref\|ZP_04533649.1\| glycogen phosphorylase GlgP [Escherichia sp. 3_2_53FAA], gi\|22690243... gi\|26110468, gi\|... - gi\|26250039\|ref\|NP_756079.1\| glycogen phosphorylase [Escherichia coli CFT073], gi\|26110468\|gb\|AAN826...	1214.0	[0..1]	[815..1]
lcl\|NC_016856.1_... - [gene=glgP] [protein=glycogen phosphorylase] [protein_id=YP_005239739.1] [location=complement(371261... gi\|16422093, gi\|... - gi\|16766820\|ref\|NP_462435.1\| glycogen phosphorylase [Salmonella typhimurium LT2], gi\|16422093\|gb\|AAL... gi\|194409010, gi... - gi\|194450706\|ref\|YP_002047558.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|167990742, gi... - gi\|205330828\|gb\|EDZ17592.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168241679, gi... - gi\|205338770\|gb\|EDZ25534.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonella e...	1212.0	[0..1]	[815..1]
gi\|207858773, gi... - gi\|207858773\|ref\|YP_002245424.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|204322094, gi... - gi\|204928661\|ref\|ZP_03219860.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|199604662, gi... - gi\|200387564\|ref\|ZP_03214176.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonel... gi\|197936341, gi... - gi\|198241825\|ref\|YP_002217492.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|197364365, gi... - gi\|197364365\|ref\|YP_002144002.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|197266048, gi... - gi\|197266048\|ref\|ZP_03166122.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|197214800, gi... - gi\|197251097\|ref\|YP_002148457.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|194710025, gi... - gi\|194734523\|ref\|YP_002116468.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|194468936, gi... - gi\|194468936\|ref\|ZP_03074920.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|194404880, gi... - gi\|194446217\|ref\|YP_002042779.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|205344553, gi... - gi\|205344553\|gb\|EDZ31317.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Welt... gi\|195632191, gi... - gi\|195632191\|gb\|EDX50675.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Newp... gi\|205350199, gi... - gi\|205350199\|gb\|EDZ36830.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Hada... gi\|197291597, gi... - gi\|197291597\|gb\|EDY30949.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Schw... gi\|168232675, gi... - gi\|205333165\|gb\|EDZ19929.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonella e... gi\|205325751, gi... - gi\|205325751\|gb\|EDZ13590.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Sain... gi\|62182034, gi\|... - gi\|62182034\|ref\|YP_218451.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Cho... gi\|161365937, gi... - gi\|161616573\|ref\|YP_001590538.1\| hypothetical protein SPAB_04389 [Salmonella enterica subsp. enteric... gi\|56129692, gi\|... - gi\|56415435\|ref\|YP_152510.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Par...	1212.0	[0..1]	[815..1]
gi\|213647827 - gi\|213647827\|ref\|ZP_03377880.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|213610061 - gi\|213610061\|ref\|ZP_03369887.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|213426869 - gi\|213426869\|ref\|ZP_03359619.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|213163528 - gi\|213163528\|ref\|ZP_03349238.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|214002862 - gi\|214002862\|ref\|ZP_03413597.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|29139891, gi\|... - gi\|29144254\|ref\|NP_807596.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Typ... gi\|16762767 - gi\|16762767\|ref\|NP_458384.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Typ... gi\|16505073, gi\|... - gi\|25286727\|pir\|\|AB0996 glycogen phosphorylase (EC 2.4.1.1) [imported] - Salmonella enterica subsp. ...	1211.0	[0..1]	[815..1]
gi\|606363\|gb\|AAA... - alpha-glucan phosphorylase [Escherichia coli] gi\|606363 - gi\|606363\|gb\|AAA58226.1\| alpha-glucan phosphorylase [Escherichia coli]	1210.0	[0..1]	[815..1]
gi\|209160346, gi... - gi\|209398946\|ref\|YP_002272869.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208741057, gi... - gi\|208820934\|ref\|ZP_03261254.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|217321702, gi... - gi\|217325481\|ref\|ZP_03441565.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|195934920 - gi\|195934920\|ref\|ZP_03080302.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4024] gi\|189379876, gi... - gi\|189379876\|gb\|EDU98292.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC508], gi\|1687972... gi\|208735023, gi... - gi\|208813746\|ref\|ZP_03255075.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208727297, gi... - gi\|208807496\|ref\|ZP_03249833.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|168772673, gi... - gi\|187771555\|gb\|EDU35399.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4196], gi\|168772... gi\|254594747, gi... - gi\|254795347\|ref\|YP_003080184.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|189364812, gi... - gi\|189364812\|gb\|EDU83231.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4486], gi\|168765... gi\|168785239, gi... - gi\|189374449\|gb\|EDU92865.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC869], gi\|1687852... gi\|189002435, gi... - gi\|189002435\|gb\|EDU71421.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4076], gi\|168779... gi\|188018263, gi... - gi\|188018263\|gb\|EDU56385.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4113], gi\|168747... gi\|168759459, gi... - gi\|189369754\|gb\|EDU88170.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4501], gi\|168759... gi\|15833527, gi\|... - gi\|15833527\|ref\|NP_312300.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. Sakai], gi\|133637... gi\|189358872, gi... - gi\|189358872\|gb\|EDU77291.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4401], gi\|168753... gi\|15833527, gi\|... - gi\|15833527\|ref\|NP_312300.1\| glycogen phosphorylase [Escherichia coli O157:H7], gi\|13363747\|dbj\|BAB3... gi\|209756316, gi... - pir\|\|A98163 glycogen phosphorylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|15803937, gi\|... - gi\|15803937\|ref\|NP_289973.1\| glycogen phosphorylase [Escherichia coli O157:H7 EDL933], gi\|12518072\|g...	1210.0	[0..1]	[815..1]
gi\|22298324, gi\|... - gi\|22298324\|ref\|NP_681571.1\| glycogen phosphorylase [Thermosynechococcus elongatus BP-1], gi\|2229450...	1208.0	[0..6]	[815..32]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	1206.0	[0..13]	[815..188]
gi\|109093168 - gi\|109093168\|ref\|XP_001100456.1\| PREDICTED: brain glycogen phosphorylase isoform 3 [Macaca mulatta]	1201.0	[0..13]	[815..24]

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Predicted Domain #1

Region A:
Residues: [1-815]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPFTYSSP TLSVEALKHS IAYKLMFTIG KDPVVANKHE WLNATLFAVR DRLVERWLRS  60
   61 NRAQLSQETR QVYYLSMEFL IGRTLSNAML SLGIYEDVQG ALEAMGLNLE ELIDEENDPG 120
  121 LGNGGLGRLA ACFLDSLATL GLPGRGYGIR YDYGMFKQNI VNGSQKESPD YWLEYGNPWE 180
  181 FKRHNTRYKV RFGGRIQQEG KKTRWIETEE ILGVAYDQII PGYDTDATNT LRLWSAQASS 240
  241 EINLGKFNQG DYFAAVEDKN HSENVSRVLY PDDSTYSGRE LRLRQEYFLV SSTIQDILSR 300
  301 HYQLHKTYDN LADKIAIHLN DTHPVLSIPE MMRLLIDEHQ FSWDDAFEVC CQVFSYTNHT 360
  361 LMSEALETWP VDMLGKILPR HLQIIFEIND YFLKTLQEQY PNDTDLLGRA SIIDESNGRR 420
  421 VRMAWLAVVV SHKVNGVSEL HSNLMVQSLF ADFAKIFPGR FTNVTNGVTP RRWLAVANPS 480
  481 LSAVLDEHLG RNWRTDLSLL NELQQHCDFP MVNHAVHQAK LENKKRLAEY IAQQLNVVVN 540
  541 PKALFDVQIK RIHEYKRQLM NVLHVITRYN RIKADPDAKW VPRVNIFGGK AASAYYMAKH 600
  601 IIHLINDVAK VINNDPQIGD KLKVVFIPNY SVSLAQLIIP AADLSEQISL AGTEASGTSN 660
  661 MKFALNGALT IGTLDGANVE MLDHVGADNI FIFGNTAEEV EELRRQGYKP REYYEKDEEL 720
  721 HQVLTQIGSG VFSPEDPGRY RDLVDSLINF GDHYQVLADY RSYVDCQDKV DELYELQEEW 780
  781 TAKAMLNIAN MGYFSSDRTI KEYADHIWHI DPVRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits