YRC Public Data Repository - Protein Structure Prediction

Protein:	PHNP_ECOLI
Organism:	Escherichia coli
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHNP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|40804950 - gi\|40804950\|gb\|AAR91743.1\| PhnP [Pseudomonas stutzeri]	190.0	[0..3]	[249..1]
gi\|124262218, gi... - gi\|124263006\|ref\|YP_001023476.1\| carbon-phosphorus lyase complex accessory protein [Methylibium petr... gi\|47572359 - gi\|47572359\|ref\|ZP_00242403.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	182.0	[0..3]	[252..1]
gi\|71557968, gi\|... - gi\|71737415\|ref\|YP_275109.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	179.0	[0..3]	[247..1]
gi\|77974046 - gi\|77974046\|ref\|ZP_00829589.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	179.0	[0..3]	[251..1]
gi\|26111341, gi\|... - gi\|26250909\|ref\|NP_756949.1\| carbon-phosphorus lyase complex accessory protein [Escherichia coli CFT...	179.0	[0..1]	[252..1]
gi\|152961914, gi... - gi\|77631503\|ref\|ZP_00794089.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	179.0	[0..3]	[251..1]
gi\|218930479, gi... - gi\|218930479\|ref\|YP_002348354.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis ... gi\|166010196, gi... - gi\|166010196\|ref\|ZP_02231094.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... gi\|51588142, gi\|... - gi\|51594860\|ref\|YP_069051.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pseudotuber... gi\|166204522, gi... - gi\|166214290\|ref\|ZP_02240325.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... Q66F32\|Q66F32_YERPS - PhnP protein - Yersinia pseudotuberculosis gi\|167399439, gi... - gi\|167399439\|ref\|ZP_02304963.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Antiqua ... gi\|229839114, gi... - gi\|229839114\|ref\|ZP_04459273.1\| PhnP protein [Yersinia pestis biovar Orientalis str. PEXU2], gi\|2296... gi\|166961410, gi... - gi\|167420604\|ref\|ZP_02312357.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Oriental... gi\|229896602, gi... - gi\|229896602\|ref\|ZP_04511769.1\| PhnP protein [Yersinia pestis Pestoides A], gi\|229700380\|gb\|EEO88412... gi\|77634886, gi\|... - gi\|77634886\|ref\|ZP_00796978.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily... gi\|167423640, gi... - gi\|167423640\|ref\|ZP_02315393.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Mediaeva... gi\|229899678, gi... - gi\|229899678\|ref\|ZP_04514819.1\| PhnP protein [Yersinia pestis biovar Orientalis str. India 195], gi\|... gi\|167467364 - gi\|167467364\|ref\|ZP_02332068.1\| phosphonate metabolism protein PhnP [Yersinia pestis FV-1] gi\|186893869, gi... - gi\|186893869\|ref\|YP_001870981.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pseudot... gi\|165922297, gi... - gi\|165925685\|ref\|ZP_02221517.1\| phosphonate metabolism protein PhnP [Yersinia pestis biovar Oriental... gi\|165936631, gi... - gi\|89105057\|ref\|ZP_01177584.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily... gi\|108780871, gi... - gi\|108808958\|ref\|YP_652874.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis Ant... gi\|229682326, gi... - gi\|229900987\|ref\|ZP_04516111.1\| PhnP protein [Yersinia pestis Nepal516], gi\|229682326\|gb\|EEO78418.1\|... gi\|25347556 - pir\|\|AB0421 PhnP protein [imported] - Yersinia pestis (strain CO92) gi\|149289132, gi... - gi\|153997495\|ref\|ZP_02022595.1\| PhnP protein [Yersinia pestis CA88-4125], gi\|149289132\|gb\|EDM39212.1... gi\|45440471, gi\|... - gi\|45440471\|ref\|NP_992010.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis biov... gi\|145600529, gi... - gi\|145600529\|ref\|YP_001164605.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis ... gi\|21957440, gi\|... - gi\|22124633\|ref\|NP_668056.1\| carbon-phosphorus lyase complex accessory protein [Yersinia pestis KIM]...	179.0	[0..3]	[251..1]
tr\|Q882Q8\|Q882Q8... - Phosphonate metabolism protein, PhnP OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_256... gi\|28869758, gi\|... - gi\|28869758\|ref\|NP_792377.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	178.0	[0..3]	[249..1]
gi\|50119449, gi\|... - gi\|50119449\|ref\|YP_048616.1\| carbon-phosphorus lyase complex accessory protein [Pectobacterium atros...	176.0	[0..5]	[251..14]
gi\|168755272, gi... - gi\|189357423\|gb\|EDU75842.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4401], ... gi\|188017434, gi... - gi\|188017434\|gb\|EDU55556.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4113], ... gi\|25347554, gi\|... - pir\|\|H86103 phosphonate metabolism [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|12519057, gi\|... - gi\|15804685\|ref\|NP_290726.1\| carbon-phosphorus lyase complex accessory protein [Escherichia coli O15... gi\|13364552, gi\|... - gi\|15834329\|ref\|NP_313102.1\| PhnP [Escherichia coli O157:H7], gi\|13364552\|dbj\|BAB38498.1\| phosphonat... gi\|217321205, gi... - gi\|217324984\|ref\|ZP_03441068.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. TW145... gi\|209399538, gi... - gi\|209399538\|ref\|YP_002273637.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC41... gi\|208738745, gi... - gi\|208818622\|ref\|ZP_03258942.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC404... gi\|254796115, gi... - gi\|254796115\|ref\|YP_003080952.1\| carbon-phosphorus lyase complex accessory protein [Escherichia coli... gi\|208735153, gi... - gi\|208813876\|ref\|ZP_03255205.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC404... gi\|13364552, gi\|... - gi\|15834329\|ref\|NP_313102.1\| carbon-phosphorus lyase complex accessory protein [Escherichia coli O15... gi\|189001753, gi... - gi\|189001753\|gb\|EDU70739.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4076], ... gi\|187769830, gi... - gi\|187769830\|gb\|EDU33674.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4196], ... gi\|189364200, gi... - gi\|189364200\|gb\|EDU82619.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4486], ... gi\|189368593, gi... - gi\|189368593\|gb\|EDU87009.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC4501], ... gi\|208725672, gi... - gi\|208805871\|ref\|ZP_03248208.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC420... gi\|195935881 - gi\|195935881\|ref\|ZP_03081263.1\| carbon-phosphorus lyase complex accessory protein [Escherichia coli ... gi\|189379056, gi... - gi\|189379056\|gb\|EDU97472.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC508], g... gi\|168784718, gi... - gi\|189375060\|gb\|EDU93476.1\| phosphonate utilization protein [Escherichia coli O157:H7 str. EC869], g...	176.0	[0..1]	[252..1]

Back

Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTLTLTGT GGAQGVPAWG CECAACARAR RSPQYRRQPC SGVVKFNDAI TLIDAGLHDL  60
   61 ADRWSPGSFQ QFLLTHYHMD HVQGLFPLRW GVGDPIPVYG PPDEQGCDDL FKHPGLLDFS 120
  121 HTVEPFVVFD LQGLQVTPLP LNHSKLTFGY LLETAHSRVA WLSDTAGLPE KTLKFLRNNQ 180
  181 PQVMVMDCSH PPRADAPRNH CDLNTVLALN QVIRSPRVIL THISHQFDAW LMENALPSGF 240
  241 EVGFDGMEIG VA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1y44A
Description:	Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: