YRC Public Data Repository - Protein Structure Prediction

Protein:	PHNJ_ECOLI
Organism:	Escherichia coli
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHNJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91075220, gi\|... - gi\|91213646\|ref\|YP_543632.1\| PhnJ protein [Escherichia coli UTI89], gi\|91075220\|gb\|ABE10101.1\| PhnJ ... gi\|226901599, gi... - gi\|237703687\|ref\|ZP_04534168.1\| PhnJ protein [Escherichia sp. 3_2_53FAA], gi\|226901599\|gb\|EEH87858.1...	598.0	[0..1]	[281..29]
gi\|26250914, gi\|... - gi\|26250914\|ref\|NP_756954.1\| PhnJ protein [Escherichia coli CFT073], gi\|26111346\|gb\|AAN83528.1\|AE016...	597.0	[0..1]	[281..29]
gi\|147205 - gi\|147205\|gb\|AAA24348.1\| phnJ protein gi\|188489470, gi... - gi\|75514858\|ref\|ZP_00737087.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|81247845, gi\|... - gi\|82546434\|ref\|YP_410381.1\| PhnJ [Shigella boydii Sb227], gi\|81247845\|gb\|ABB68553.1\| PhnJ [Shigella... gi\|170021902, gi... - gi\|170021902\|ref\|YP_001726856.1\| phosphonate metabolism PhnJ [Escherichia coli ATCC 8739], gi\|169756... gi\|218363420, gi... - gi\|218556651\|ref\|YP_002389565.1\| carbon-phosphorus lyase complex subunit [Escherichia coli IAI1], gi... gi\|194423849, gi... - gi\|83587223\|ref\|ZP_00925852.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|218372750, gi... - gi\|218702764\|ref\|YP_002410393.1\| carbon-phosphorus lyase complex subunit [Escherichia coli IAI39], g... gi\|124501181, gi... - gi\|124527738\|ref\|ZP_01699173.1\| phosphonate metabolism PhnJ [Escherichia coli B], gi\|124501181\|gb\|EA... gi\|218434811, gi... - gi\|218707714\|ref\|YP_002415233.1\| carbon-phosphorus lyase complex subunit [Escherichia coli UMN026], ... gi\|75188815, gi\|... - gi\|75188815\|ref\|ZP_00702082.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|193067829, gi... - gi\|75238628\|ref\|ZP_00722617.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|254164033, gi... - gi\|254164033\|ref\|YP_003047141.1\| carbon-phosphorus lyase complex subunit [Escherichia coli B str. RE... gi\|253775272, gi... - gi\|254290783\|ref\|YP_003056531.1\| carbon-phosphorus lyase complex subunit [Escherichia coli BL21(DE3)... gi\|251787352, gi... - gi\|251787352\|ref\|YP_003001656.1\| hypothetical protein B21_03930 [Escherichia coli BL21], gi\|24237962...	597.0	[0..1]	[281..1]
gi\|194419404, gi... - gi\|194432201\|ref\|ZP_03064489.1\| phosphonate metabolism protein PhnJ [Shigella dysenteriae 1012], gi\|... gi\|75259018, gi\|... - gi\|75259018\|ref\|ZP_00730386.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|218697801, gi... - gi\|218697801\|ref\|YP_002405468.1\| carbon-phosphorus lyase complex subunit [Escherichia coli 55989], g... gi\|191169274, gi... - gi\|75227432\|ref\|ZP_00714204.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|194426764, gi... - gi\|75212027\|ref\|ZP_00712082.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi... gi\|75197951, gi\|... - gi\|75197951\|ref\|ZP_00708021.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi...	595.0	[0..1]	[281..1]
gi\|191172022, gi... - gi\|75241148\|ref\|ZP_00725022.1\| COG3627: Uncharacterized enzyme of phosphonate metabolism [Escherichi...	595.0	[0..1]	[281..1]
gi\|254796121, gi... - gi\|254796121\|ref\|YP_003080958.1\| carbon-phosphorus lyase complex subunit [Escherichia coli O157:H7 s... gi\|15834335, gi\|... - gi\|15834335\|ref\|NP_313108.1\| PhnJ [Escherichia coli O157:H7 str. Sakai], gi\|13364558\|dbj\|BAB38504.1\|... gi\|208735336, gi... - gi\|208814059\|ref\|ZP_03255388.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. E... gi\|208741076, gi... - gi\|208820953\|ref\|ZP_03261273.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. E... gi\|209161288, gi... - gi\|209399888\|ref\|YP_002273642.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. ... gi\|217321902, gi... - gi\|217325681\|ref\|ZP_03441765.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. T... gi\|168784724, gi... - gi\|189375077\|gb\|EDU93493.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC869... gi\|168798232, gi... - gi\|189379221\|gb\|EDU97637.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC508... gi\|195935887 - gi\|195935887\|ref\|ZP_03081269.1\| PhnJ [Escherichia coli O157:H7 str. EC4024] gi\|208808658, gi... - gi\|208808658\|ref\|ZP_03250995.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. E... gi\|168760957, gi... - gi\|189368628\|gb\|EDU87044.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC450... gi\|25339965, gi\|... - pir\|\|A91264 phosphonate metabolism [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|168766367, gi... - gi\|189364323\|gb\|EDU82742.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC448... gi\|168774466, gi... - gi\|187769975\|gb\|EDU33819.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC419... gi\|189001853, gi... - gi\|189001853\|gb\|EDU70839.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC407... gi\|15834335, gi\|... - gi\|15834335\|ref\|NP_313108.1\| PhnJ [Escherichia coli O157:H7], gi\|13364558\|dbj\|BAB38504.1\| phosphonat... gi\|188017566, gi... - gi\|188017566\|gb\|EDU55688.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC411... gi\|168755278, gi... - gi\|189357429\|gb\|EDU75848.1\| phosphonate metabolism protein PhnJ [Escherichia coli O157:H7 str. EC440...	595.0	[0..1]	[281..1]
gi\|74314585, gi\|... - gi\|74314585\|ref\|YP_313004.1\| phosphonate metabolism [Shigella sonnei Ss046], gi\|73858062\|gb\|AAZ90769...	593.0	[0..1]	[281..1]
gi\|110346048, gi... - gi\|110644456\|ref\|YP_672186.1\| PhnJ protein [Escherichia coli 536], gi\|110346048\|gb\|ABG72285.1\| PhnJ ...	592.0	[0..1]	[281..1]
gi\|25339967 - pir\|\|F86104 phosphonate metabolism [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi\|12519066, gi\|... - gi\|15804691\|ref\|NP_290732.1\| phosphonate metabolism [Escherichia coli O157:H7 EDL933], gi\|12519066\|g...	592.0	[0..1]	[281..1]
gi\|82779170, gi\|... - gi\|82779170\|ref\|YP_405519.1\| phosphonate metabolism [Shigella dysenteriae Sd197], gi\|81243318\|gb\|ABB...	587.0	[0..1]	[281..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLSGYNFA YLDEQTKRMI RRAILKAVAI PGYQVPFGGR EMPMPYGWGT GGIQLTASVI  60
   61 GESDVLKVID QGADDTTNAV SIRNFFKRVT GVNT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TERTDDATVI QTRHRIPETP LTEDQIIIFQ VPIPEPLRFI EPRETETRTM HALEEYGVMQ  60
   61 VKLYEDIARF GHIATTYAYP VKVNGRYVMD PSPIPKFDNP KMDMMPALQL FGAGREKRIY 120
  121 AVPPFTRVES LDFDDHPFTV QQWDEPCAIC GSTHSYLDEV VLDDAGNRMF VCSDTDYCRQ 180
  181 QSEAKNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits