YRC Public Data Repository - Protein Structure Prediction

Protein:	PHND_ECOLI
Organism:	Escherichia coli
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHND_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|27375956, gi\|... - gi\|27375956\|ref\|NP_767485.1\| hypothetical protein blr0845 [Bradyrhizobium japonicum USDA 110], gi\|27...	227.0	[0..3]	[297..4]
gi\|72122308, gi\|... - gi\|73538971\|ref\|YP_299338.1\| hypothetical protein Reut_B5146 [Ralstonia eutropha JMP134], gi\|7212230...	225.0	[0..1]	[299..4]
gi\|91700813, gi\|... - gi\|91790933\|ref\|YP_551884.1\| hypothetical protein Bpro_5119 [Polaromonas sp. JS666], gi\|91700813\|gb\|...	218.0	[0..3]	[304..6]
gi\|68529078, gi\|... - gi\|94314301\|ref\|YP_587510.1\| hypothetical protein Rmet_5382 [Ralstonia metallidurans CH34], gi\|93358...	217.0	[0..2]	[298..8]
gi\|84709961, gi\|... - gi\|84709961\|ref\|ZP_01018896.1\| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2], g...	216.0	[0..3]	[294..12]
gi\|113527513, gi... - gi\|113868737\|ref\|YP_727226.1\| extra-cytoplasmic solute receptor [Ralstonia eutropha H16], gi\|1135275...	216.0	[0..1]	[294..1]
gi\|78694123, gi\|... - gi\|78694123\|ref\|ZP_00858636.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851723...	214.0	[0..3]	[297..4]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAKIIASLA FTSMFSLSTL LSPAHAEEQE KALNFGIIST ESQQNLKPQW TPFLQDMEKK  60
   61 LGVKVNAFFA PDYAGIIQGM RFNKVDIAWY GNLSAMEAVD RANGQVFAQT VAADGSPGYW 120
  121 SVLIVNKDSP INNLNDLLAK RKDLTFGNGD PNSTSGFLVP GYYVFAKNNI SASDFKRTVN 180
  181 AGHETNALAV ANKQVDVATN NTENLDKLKT SAPEKLKELK VIWKSPLIPG DPIVWRKNLS 240
  241 ETTKDKIYDF FMNYGKTPEE KAVLERLGWA PFRASSDLQL VPIRQLALFK EMQGVKSNKG 300
  301 LNEQDKLAKT TEIQAQLDDL DRLNNALSAM SSVSKAVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2dvzA
Description:	No description for 2dvzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits