YRC Public Data Repository - Protein Structure Prediction

Protein:	PHNB_ECOLI
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHNB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|54030969, gi\|... - gi\|91790597\|ref\|YP_551549.1\| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas sp. JS666], gi\|...	137.0	[0..1]	[141..1]
gi\|116696472, gi... - gi\|116696472\|ref\|YP_842048.1\| hypothetical protein H16_B2536 [Ralstonia eutropha H16], gi\|113530971\|...	137.0	[0..1]	[143..1]
gi\|209921596, gi... - gi\|209921596\|ref\|YP_002295680.1\| hypothetical protein ECSE_4405 [Escherichia coli SE11], gi\|20991485... gi\|218354541, gi... - gi\|218697809\|ref\|YP_002405476.1\| hypothetical protein EC55989_4597 [Escherichia coli 55989], gi\|2183... gi\|193067814, gi... - gi\|75238636\|ref\|ZP_00722625.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191169266, gi... - gi\|75227424\|ref\|ZP_00714196.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157069252, gi... - gi\|75197959\|ref\|ZP_00708029.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75188823, gi\|... - gi\|75188823\|ref\|ZP_00702090.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c...	137.0	[0..1]	[147..1]
gi\|254037117, gi... - gi\|254037117\|ref\|ZP_04871194.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684022... gi\|188488897, gi... - gi\|75514866\|ref\|ZP_00737095.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192931321, gi... - gi\|75259026\|ref\|ZP_00730394.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218556659, gi... - gi\|218556659\|ref\|YP_002389573.1\| hypothetical protein ECIAI1_4336 [Escherichia coli IAI1], gi\|218363... gi\|75212036, gi\|... - gi\|75212036\|ref\|ZP_00712091.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c...	136.0	[0..1]	[147..1]
gi\|111280010, gi... - gi\|111619589\|ref\|ZP_01406598.1\| Glyoxalase/bleomycin resistance protein/dioxygenase:3-demethylubiqui...	136.0	[0..1]	[141..29]
gi\|17431071 - gi\|17431071\|emb\|CAD17752.1\| putative glyoxalase/bleomycin resistance protein/dioxygenase [Ralstonia ... gi\|17548822 - gi\|17548822\|ref\|NP_522162.1\| hypothetical protein RSp0601 [Ralstonia solanacearum GMI1000]	136.0	[0..1]	[143..1]
gi\|30064676, gi\|... - gi\|30064676\|ref\|NP_838847.1\| hypothetical protein S3614 [Shigella flexneri 2a str. 2457T], gi\|300429... gi\|24054625, gi\|... - gi\|24115324\|ref\|NP_709834.1\| hypothetical protein SF4116 [Shigella flexneri 2a str. 301], gi\|2405462... gi\|15804699, gi\|... - gi\|15804699\|ref\|NP_290740.1\| hypothetical protein Z5709 [Escherichia coli O157:H7 EDL933], gi\|125190... gi\|15834343, gi\|... - gi\|15834343\|ref\|NP_313116.1\| hypothetical protein ECs5089 [Escherichia coli O157:H7], gi\|13364566\|db... gi\|91213654, gi\|... - gi\|91213654\|ref\|YP_543640.1\| hypothetical protein UTI89_C4701 [Escherichia coli UTI89], gi\|91075228\|... gi\|15834343, gi\|... - gi\|15834343\|ref\|NP_313116.1\| hypothetical protein ECs5089 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189357477, gi... - gi\|189357477\|gb\|EDU75896.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4401], gi\|1687552... gi\|237703695, gi... - gi\|237703695\|ref\|ZP_04534176.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117626394, gi... - gi\|117626394\|ref\|YP_859717.1\| hypothetical protein APECO1_2344 [Escherichia coli APEC O1], gi\|115515... gi\|188017423, gi... - gi\|188017423\|gb\|EDU55545.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4113], gi\|1687480... gi\|254595529, gi... - gi\|254796129\|ref\|YP_003080966.1\| hypothetical protein ECSP_5206 [Escherichia coli O157:H7 str. TW143... gi\|110617442, gi... - gi\|110807894\|ref\|YP_691414.1\| hypothetical protein SFV_4123 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|25369650, gi\|... - pir\|\|F86105 hypothetical protein phnB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208820612, gi... - gi\|208820612\|ref\|ZP_03260932.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|208733751, gi... - gi\|208812474\|ref\|ZP_03253803.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|217320603, gi... - gi\|217324382\|ref\|ZP_03440466.1\| putative phnB protein [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|209160666, gi... - gi\|209399266\|ref\|YP_002273651.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|218561196, gi... - gi\|218561196\|ref\|YP_002394109.1\| hypothetical protein ECS88_4608 [Escherichia coli S88], gi\|21836796... gi\|189364287, gi... - gi\|189364287\|gb\|EDU82706.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4486], gi\|1687663... gi\|168760965, gi... - gi\|189368638\|gb\|EDU87054.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4501], gi\|1687609... gi\|168780528, gi... - gi\|189001706\|gb\|EDU70692.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4076], gi\|1687805... gi\|187769909, gi... - gi\|187769909\|gb\|EDU33753.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4196], gi\|1687744... gi\|168798223, gi... - gi\|189379103\|gb\|EDU97519.1\| putative phnB protein [Escherichia coli O157:H7 str. EC508], gi\|16879822... gi\|189374903, gi... - gi\|189374903\|gb\|EDU93319.1\| putative phnB protein [Escherichia coli O157:H7 str. EC869], gi\|16878473... gi\|208729379, gi... - gi\|208809578\|ref\|ZP_03251915.1\| putative phnB protein [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195935895 - gi\|195935895\|ref\|ZP_03081277.1\| hypothetical protein EscherichcoliO157_05430 [Escherichia coli O157:... gi\|75179545, gi\|... - gi\|75179545\|ref\|ZP_00699549.1\| COG2764: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|81247853, gi\|... - gi\|82546442\|ref\|YP_410389.1\| hypothetical protein SBO_4132 [Shigella boydii Sb227], gi\|81247853\|gb\|A...	136.0	[0..1]	[147..1]
gi\|26250922, gi\|... - gi\|26250922\|ref\|NP_756962.1\| hypothetical protein c5112 [Escherichia coli CFT073], gi\|26111354\|gb\|AA... gi\|227836197, gi... - gi\|227886855\|ref\|ZP_04004660.1\| phnB protein [Escherichia coli 83972], gi\|227836197\|gb\|EEJ46663.1\| p...	136.0	[0..1]	[147..1]
gi\|121606877, gi... - gi\|84714364\|ref\|ZP_01021829.1\| phnB, RSp0601; PhnB protein [Polaromonas naphthalenivorans CJ2], gi\|8...	136.0	[0..1]	[141..16]
gi\|74021576, gi\|... - gi\|89902868\|ref\|YP_525339.1\| 3-demethylubiquinone-9 3-methyltransferase [Rhodoferax ferrireducens T1...	135.0	[0..1]	[142..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSPYLSFA GNCSDAIAYY QRTLGAELLY KISFGEMPKS AQDSAENCPS GMQFPDTAIA  60
   61 HANVRIAGSD IMMSDAMPSG KASYSGFTLV LDSQQVEEGK RWFDNLAANG KIEMAWQETF 120
  121 WAHGFGKVTD KFGVPWMINV VKQQPTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	1u6lA
Description:	crystal structure of a hypothetical protein from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21778090213032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: