YRC Public Data Repository - Protein Structure Prediction

Protein:	PEPQ_ECOLI
Organism:	Escherichia coli
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEPQ_ECOLI.

Description	E-value	Query Range	Subject Range
PEPQ_SHISS - Xaa-Pro dipeptidase OS=Shigella sonnei (strain Ss046) GN=pepQ PE=3 SV=1 gi\|75238295, gi\|... - gi\|75238295\|ref\|ZP_00722294.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli E110019], gi\|193068...	332.0	[0..1]	[443..1]
PEPQ_ECOL6 - Xaa-Pro dipeptidase OS=Escherichia coli O6 GN=pepQ PE=3 SV=1 sp\|B7UNH5\|PEPQ_ECO27 - Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOK1 - Xaa-Pro dipeptidase OS=Escherichia coli O1:K1 / APEC GN=pepQ PE=3 SV=1 PEPQ_ECOL5 - Xaa-Pro dipeptidase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOL6 - Xaa-Pro dipeptidase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOSM - Xaa-Pro dipeptidase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pepQ PE=3 SV=1 PEPQ_ECO27 - Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pepQ PE=3 SV=1 gi\|237702880, gi... - gi\|237702880\|ref\|ZP_04533361.1\| xaa-Pro dipeptidase [Escherichia sp. 3_2_53FAA], gi\|226903051\|gb\|EEH... gi\|191173907, gi... - gi\|75237620\|ref\|ZP_00721640.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli F11], gi\|191173907\|... PEPQ_ECO45 - Xaa-Pro dipeptidase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=pepQ PE=3 SV=1 gi\|227888541, gi... - gi\|227888541\|ref\|ZP_04006346.1\| proline dipeptidase [Escherichia coli 83972], gi\|227834380\|gb\|EEJ448... PEPQ_ECOUT - Xaa-Pro dipeptidase OS=Escherichia coli (strain UTI89 / UPEC) GN=pepQ PE=3 SV=1	332.0	[0..1]	[443..1]
gi\|42358 - gi\|42358\|emb\|CAA38501.1\| unnamed protein product [Escherichia coli]	331.0	[0..1]	[438..1]
PEPQ_SHIB3 - Xaa-Pro dipeptidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pepQ PE=3 SV=1 PEPQ_SHIBS - Xaa-Pro dipeptidase OS=Shigella boydii serotype 4 (strain Sb227) GN=pepQ PE=3 SV=1	330.0	[0..1]	[443..1]
gi\|24115141, gi\|... - gi\|24115141\|ref\|NP_709651.1\| proline dipeptidase [Shigella flexneri 2a str. 301], gi\|24054415\|gb\|AAN... PEPQ_SHIFL - Xaa-Pro dipeptidase OS=Shigella flexneri GN=pepQ PE=3 SV=1	330.0	[0..1]	[443..1]
gi\|188490193, gi... - gi\|75512600\|ref\|ZP_00735112.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli 53638], gi\|18849499...	330.0	[0..1]	[443..1]
gi\|194417703, gi... - gi\|83569319\|ref\|ZP_00920774.1\| COG0006: Xaa-Pro aminopeptidase [Shigella dysenteriae 1012], gi\|19443...	330.0	[0..1]	[443..1]
gi\|25289699, gi\|... - pir\|\|G91225 proline dipeptidase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050995... gi\|15804437, gi\|... - gi\|15804437\|ref\|NP_290477.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 EDL933], gi\|12518725\|gb\|A... PEPQ_ECO57 - Xaa-Pro dipeptidase OS=Escherichia coli O157:H7 GN=pepQ PE=3 SV=1 gi\|168763976, gi... - gi\|189365975\|gb\|EDU84391.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4501], gi\|168763976... gi\|168753748, gi... - gi\|189359337\|gb\|EDU77756.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4401], gi\|168753748... gi\|168750337, gi... - gi\|188015434\|gb\|EDU53556.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4113], gi\|168750337... gi\|254595243, gi... - gi\|254795843\|ref\|YP_003080680.1\| proline dipeptidase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|217322472, gi... - gi\|217326251\|ref\|ZP_03442335.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. TW14588], gi\|2173... PEPQ_ECO5E - Xaa-Pro dipeptidase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=pepQ PE=3 SV=1 gi\|208740577, gi... - gi\|208820454\|ref\|ZP_03260774.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|13364251, gi\|... - gi\|15834029\|ref\|NP_312802.1\| proline dipeptidase [Escherichia coli O157:H7 str. Sakai], gi\|13364251\|... gi\|168786688, gi... - gi\|189373246\|gb\|EDU91662.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC869], gi\|168786688\|... gi\|168780750, gi... - gi\|189001550\|gb\|EDU70536.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4076], gi\|168780750... gi\|168775598, gi... - gi\|187768898\|gb\|EDU32742.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4196], gi\|168775598... gi\|189362573, gi... - gi\|189362573\|gb\|EDU80992.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4486], gi\|168768132... gi\|208813783, gi... - gi\|208813783\|ref\|ZP_03255112.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208809719, gi... - gi\|208809719\|ref\|ZP_03252056.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195938137 - gi\|195938137\|ref\|ZP_03083519.1\| proline dipeptidase [Escherichia coli O157:H7 str. EC4024] gi\|189376678, gi... - gi\|189376678\|gb\|EDU95094.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC508], gi\|168801085\|...	330.0	[0..1]	[443..1]
lcl\|NC_016856.1_... - [gene=pepQ] [protein=proline dipeptidase] [protein_id=YP_005240249.1] [location=4205380..4206711] PEPQ_SALPC - Xaa-Pro dipeptidase OS=Salmonella paratyphi C (strain RKS4594) GN=pepQ PE=3 SV=1 gi\|214002456 - gi\|214002456\|ref\|ZP_03413191.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typ... PEPQ_SALTY - Xaa-Pro dipeptidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pepQ PE=3 SV=... gi\|29139275, gi\|... - gi\|29143640\|ref\|NP_806982.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typhi ... PEPQ_SALTI - Xaa-Pro dipeptidase OS=Salmonella typhi GN=pepQ PE=3 SV=1 gi\|238912987 - gi\|238912987\|ref\|ZP_04656824.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Ten... gi\|16762151 - gi\|16762151\|ref\|NP_457768.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typhi ... PEPQ_SALTY - Xaa-Pro dipeptidase OS=Salmonella typhimurium GN=pepQ PE=3 SV=1 PEPQ_SALPA - Xaa-Pro dipeptidase OS=Salmonella paratyphi A GN=pepQ PE=3 SV=1 PEPQ_SALTI - Xaa-Pro dipeptidase OS=Salmonella typhi GN=pepQ PE=3 SV=1 PEPQ_SALCH - Xaa-Pro dipeptidase OS=Salmonella choleraesuis GN=pepQ PE=3 SV=1 gi\|205336491, gi... - gi\|205336491\|gb\|EDZ23255.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Heidelb... gi\|197288737, gi... - gi\|197288737\|gb\|EDY28112.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Schwarz... gi\|168467599, gi... - gi\|195629963\|gb\|EDX48623.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Newport... gi\|205348146, gi... - gi\|205348146\|gb\|EDZ34777.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Hadar s... gi\|205322149, gi... - gi\|205322149\|gb\|EDZ09988.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Saintpa... gi\|168233919, gi... - gi\|205332085\|gb\|EDZ18849.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Kentuck... PEPQ_SALCH - Xaa-Pro dipeptidase OS=Salmonella choleraesuis GN=pepQ PE=3 SV=1 PEPQ_SALCH - Xaa-Pro dipeptidase OS=Salmonella choleraesuis (strain SC-B67) GN=pepQ PE=3 SV=1 gi\|167993924, gi... - gi\|205328168\|gb\|EDZ14932.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar 4,[5],1... PEPQ_SALTY - Xaa-Pro dipeptidase OS=Salmonella typhimurium GN=pepQ PE=3 SV=1 gi\|213424459 - gi\|213424459\|ref\|ZP_03357268.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typ... gi\|213022541 - gi\|213022541\|ref\|ZP_03336988.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typ... gi\|213854785 - gi\|213854785\|ref\|ZP_03383025.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typ... gi\|213586675 - gi\|213586675\|ref\|ZP_03368501.1\| proline dipeptidase [Salmonella enterica subsp. enterica serovar Typ... gi\|204320657, gi... - gi\|204930253\|ref\|ZP_03221230.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Jav... gi\|199604720, gi... - gi\|200387622\|ref\|ZP_03214234.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Vir... PEPQ_SALEP - Xaa-Pro dipeptidase OS=Salmonella enteritidis PT4 (strain P125109) GN=pepQ PE=3 SV=1 PEPQ_SALG2 - Xaa-Pro dipeptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=pepQ PE=3 SV=1 PEPQ_SALPA - Xaa-Pro dipeptidase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=pepQ PE=3 SV=1 gi\|197240328, gi... - gi\|197262073\|ref\|ZP_03162147.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Sai... PEPQ_SALA4 - Xaa-Pro dipeptidase OS=Salmonella agona (strain SL483) GN=pepQ PE=3 SV=1 PEPQ_SALDC - Xaa-Pro dipeptidase OS=Salmonella dublin (strain CT_02021853) GN=pepQ PE=3 SV=1 PEPQ_SALPK - Xaa-Pro dipeptidase OS=Salmonella paratyphi A (strain AKU_12601) GN=pepQ PE=3 SV=1 PEPQ_SALHS - Xaa-Pro dipeptidase OS=Salmonella heidelberg (strain SL476) GN=pepQ PE=3 SV=1 PEPQ_SALNS - Xaa-Pro dipeptidase OS=Salmonella newport (strain SL254) GN=pepQ PE=3 SV=1 PEPQ_SALSV - Xaa-Pro dipeptidase OS=Salmonella schwarzengrund (strain CVM19633) GN=pepQ PE=3 SV=1 gi\|194458238, gi... - gi\|194471874\|ref\|ZP_03077858.1\| Xaa-Pro dipeptidase [Salmonella enterica subsp. enterica serovar Ken...	329.0	[0..1]	[443..1]

Back

Predicted Domain #1

Region A:
Residues: [1-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLASLYKN HIATLQERTR DALARFKLDA LLIHSGELFN VFLDDHPYPF KVNPQFKAWV  60
   61 PVTQVPNCWL LVDGVNKPKL WFYLPVDYWH NVEPLPTSFW TEDVEVIALP KADGIGSLLP 120
  121 AARGNIGYIG PVPERALQLG IEASNINPKG VIDYLHYYRS FKTEYELACM REAQKMAVNG 180
  181 HRAAEEAFRS GMSEFDINIA YLTATGHRDT DVPYSNIVAL NEHAAVLHYT KLDHQAPEEM 240
  241 RSFLLDAGAE YNGYAADLTR TWSAKSDNDY AQLVKDVNDE QLALIATMKA GVSYVDYHIQ 300
  301 FHQRIAKLLR KHQIITDMSE EAMVENDLTG PFMPHGIGHP LGLQVHDVAG FMQDDSGTHL 360
  361 AAPAKYPYLR CTRILQPGMV LTIEPGIYFI ESLLAPWREG QFSKHFNWQK IEALKPFGGI 420
  421 RIEDNVVIHE NNVENMTRDL KLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.522879
Match:	2iw2A
Description:	No description for 2iw2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits