YRC Public Data Repository - Protein Structure Prediction

Protein:	PARC_ECOLI
Organism:	Escherichia coli
Length:	752 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PARC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|153839549, gi... - gi\|153839549\|ref\|ZP_01992216.1\| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810], gi\|149746930... gi\|28806924, gi\|... - gi\|28898706\|ref\|NP_798311.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633], gi\|288069... gi\|28806924 - gi\|28806924\|dbj\|BAC60195.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]	979.0	[0..1]	[751..4]
gi\|4886573, gi\|1... - gi\|4886573\|dbj\|BAA77788.1\| DNA gyrase [Vibrio parahaemolyticus], pir\|\|T43767 DNA topoisomerase (ATP-...	976.0	[0..1]	[751..4]
gi\|83724218, gi\|... - gi\|83749097\|ref\|ZP_00946102.1\| DNA gyrase subunit A [Ralstonia solanacearum UW551], gi\|83724218\|gb\|E...	974.0	[0..2]	[751..136]
gi\|86148463, gi\|... - gi\|86148463\|ref\|ZP_01066753.1\| DNA gyrase, subunit A [Vibrio sp. MED222], gi\|85833760\|gb\|EAQ51928.1\|...	969.0	[0..1]	[751..4]
gi\|90581243, gi\|... - gi\|90581243\|ref\|ZP_01237041.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14], g...	968.0	[0..1]	[751..4]
gi\|54309620, gi\|... - gi\|54309620\|ref\|YP_130640.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum ...	968.0	[0..1]	[751..4]
gi\|73760122 - gi\|73760122\|dbj\|BAE19968.1\| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]	968.0	[0..1]	[751..4]
gi\|90412222, gi\|... - gi\|90412222\|ref\|ZP_01220228.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundu...	968.0	[0..1]	[751..4]
gi\|84393089, gi\|... - gi\|84393089\|ref\|ZP_00991854.1\| DNA gyrase, subunit A [Vibrio splendidus 12B01], gi\|84376246\|gb\|EAP93...	966.0	[0..1]	[751..4]
gi\|2731385 - gi\|2731385\|gb\|AAB95117.1\| DNA gyrase [Serratia marcescens]	966.0	[0..1]	[750..4]

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Predicted Domain #1

Region A:
Residues: [1-752]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF  60
   61 KKSARTVGDV LGKYHPHGDS ACYEAMVLMA QPFSYRYPLV DGQGNWGAPD DPKSFAAMRY 120
  121 TESRLSKYSE LLLSELGQGT ADWVPNFDGT LQEPKMLPAR LPNILLNGTT GIAVGMATDI 180
  181 PPHNLREVAQ AAIALIDQPK TTLDQLLDIV QGPDYPTEAE IITSRAEIRK IYENGRGSVR 240
  241 MRAVWKKEDG AVVISALPHQ VSGARVLEQI AAQMRNKKLP MVDDLRDESD HENPTRLVIV 300
  301 PRSNRVDMDQ VMNHLFATTD LEKSYRINLN MIGLDGRPAV KNLLEILSEW LVFRRDTVRR 360
  361 RLNYRLEKVL KRLHILEGLL VAFLNIDEVI EIIRNEDEPK PALMSRFGLT ETQAEAILEL 420
  421 KLRHLAKLEE MKIRGEQSEL EKERDQLQGI LASERKMNNL LKKELQADAQ AYGDDRRSPL 480
  481 QEREEAKAMS EHDMLPSEPV TIVLSQMGWV RSAKGHDIDA PGLNYKAGDS FKAAVKGKSN 540
  541 QPVVFVDSTG RSYAIDPITL PSARGQGEPL TGKLTLPPGA TVDHMLMESD DQKLLMASDA 600
  601 GYGFVCTFND LVARNRAGKA LITLPENAHV MPPVVIEDAS DMLLAITQAG RMLMFPVSDL 660
  661 PQLSKGKGNK IINIPSAEAA RGEDGLAQLY VLPPQSTLTI HVGKRKIKLR PEELQKVTGE 720
  721 RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1zvuA
Description:	Structure of the full-length E. coli ParC subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits