YRC Public Data Repository - Protein Structure Prediction

Protein:	PABC_ECOLI
Organism:	Escherichia coli
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PABC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|146295873, gi... - gi\|82499813\|ref\|ZP_00885249.1\| Branched-chain amino acid aminotransferase I [Caldicellulosiruptor sa...	317.0	[0..1]	[267..5]
gi\|19888339, gi\|... - gi\|20095063\|ref\|NP_614910.1\| branched-chain amino acid aminotransferase [Methanopyrus kandleri AV19]...	313.0	[0..1]	[267..7]
gi\|110602591, gi... - gi\|110602591\|ref\|ZP_01390668.1\| branched-chain amino acid aminotransferase [Methanoculleus marisnigr...	301.0	[0..1]	[267..41]
gi\|166856656, gi... - gi\|76797553\|ref\|ZP_00779853.1\| Branched-chain amino acid aminotransferase I [Thermoanaerobacter etha... gi\|241883416, gi... - gi\|241904188\|ref\|ZP_04788894.1\| branched-chain amino acid aminotransferase [Thermoanaerobacter brock...	300.0	[0..1]	[267..3]
gi\|20093137, gi\|... - gi\|20093137\|ref\|NP_619212.1\| branched-chain amino acid aminotransferase [Methanosarcina acetivorans ...	298.0	[0..1]	[267..7]
gi\|152975241, gi... - gi\|89201079\|ref\|ZP_01179826.1\| Branched-chain amino acid aminotransferase I [Bacillus cereus subsp. ...	297.0	[0..2]	[267..6]
gi\|89210059, gi\|... - gi\|89210059\|ref\|ZP_01188452.1\| Branched-chain amino acid aminotransferase I [Halothermothrix orenii ...	297.0	[0..2]	[267..5]
gi\|48841020, gi\|... - gi\|73668121\|ref\|YP_304136.1\| branched-chain amino acid aminotransferase [Methanosarcina barkeri str....	297.0	[0..1]	[267..5]
ILVE_ARCFU - Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus GN=ilvE PE=3 SV=1 ILVE_ARCFU - Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / V...	297.0	[0..2]	[267..4]
gi\|20905479, gi\|... - gi\|21227147\|ref\|NP_633069.1\| branched-chain amino acid aminotransferase [Methanosarcina mazei Go1], ...	297.0	[0..1]	[269..7]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLINGHKQE SLAVSDRATQ FGDGCFTTAR VIDGKVSLLS AHIQRLQDAC QRLMISCDFW  60
   61 PQLEQEMKTL AAEQQNGVLK VVISRGSGGR GYSTLNSGPA TRILSVTAYP AHYDRLRNEG 120
  121 ITLALSPVRL GRNPHLAGIK HLNRLEQVLI RSHLEQTNAD EALVLDSEGW VTECCAANLF 180
  181 WRKGNVVYTP RLDQAGVNGI MRQFCIRLLA QSSYQLVEVQ ASLEESLQAD EMVICNALMP 240
  241 VMPVCACGDV SFSSATLYEY LAPLCERPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	1et0A
Description:	Aminodeoxychorismate lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-alanine:2-oxoglutarate aminotransferase activity	5.92270586163256	bayes_pls_golite062009
branched-chain-amino-acid transaminase activity	4.40524391258229	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.8158800446404	bayes_pls_golite062009
transaminase activity	2.8068647476058	bayes_pls_golite062009
catalytic activity	2.79277628243817	bayes_pls_golite062009
4-amino-4-deoxychorismate lyase activity	2.07400020867227	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	1.88117354921159	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	1.88117354921159	bayes_pls_golite062009
transferase activity	1.36772068349993	bayes_pls_golite062009
oxo-acid-lyase activity	0.20929492402161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: