YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAK_ECOLI
Organism:	Escherichia coli
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77996178, gi\|... - gi\|78044063\|ref\|YP_360551.1\| long-chain-fatty-acid--CoA ligase [Carboxydothermus hydrogenoformans Z-...	376.0	[0..21]	[433..111]
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	375.0	[0..3]	[437..75]
gi\|53763480, gi\|... - gi\|75910191\|ref\|YP_324487.1\| AMP-dependent synthetase and ligase [Anabaena variabilis ATCC 29413], g...	368.0	[0..21]	[437..85]
gi\|42739628, gi\|... - gi\|42783699\|ref\|NP_980946.1\| acyl-CoA synthetase [Bacillus cereus ATCC 10987], gi\|42739628\|gb\|AAS435...	357.0	[0..21]	[430..106]
gi\|49333026, gi\|... - gi\|49481470\|ref\|YP_038577.1\| acyl-CoA synthetase [Bacillus thuringiensis serovar konkukian str. 97-2...	357.0	[0..21]	[433..108]
gi\|51891757, gi\|... - gi\|51891757\|ref\|YP_074448.1\| long-chain fatty-acid-CoA ligase [Symbiobacterium thermophilum IAM 1486...	357.0	[0..21]	[433..118]

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Predicted Domain #1

Region A:
Residues: [1-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITNTKLDPI ETASVDELQA LQTQRLKWTL KHAYENVPMY RRKFDAAGVH PDDFRELSDL  60
   61 RKFPCTTKQD LRDNYPFDTF AVPMEQVVRI HASSGTTGKP TVVGYTQNDI DNWANIVARS 120
  121 LRAAGGSPKD KIHVAYGYGL FTGGLGAHYG AERLGATVIP MSGGQTEKQA QLIRDFQPDM 180
  181 IMVTPSYCLN LIEELERQLG GDASGCSLRV GVFGAEPWTQ AMRKEIERRL GITALDIYGL 240
  241 SEVMGPGVAM ECLETTDGPT IWEDHFYPEI VNPHDGTPLA DGEHGELLFT TLTKEALPVI 300
  301 RYRTRDLTRL LPGTARTMRR MDRISGRSDD MLIIRGVNVF PSQLEEEIVK FEHLSPHYQL 360
  361 EVNRRGHLDS LSVKVELKES SLTLTHEQRC QVCHQLRHRI KSMVGISTDV MIVNCGSIPR 420
  421 SEGKACRVFD LRNIVGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.221849
Match:	2p2mA
Description:	No description for 2p2mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits