YRC Public Data Repository - Protein Structure Prediction

Protein:	OSMY_ECOLI
Organism:	Escherichia coli
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSMY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91075664, gi\|... - gi\|91214090\|ref\|YP_544076.1\| periplasmic protein [Escherichia coli UTI89], gi\|91075664\|gb\|ABE10545.1... gi\|226840492, gi... - gi\|254037386\|ref\|ZP_04871463.1\| periplasmic protein [Escherichia sp. 1_1_43], gi\|226840492\|gb\|EEH724... gi\|226902024, gi... - gi\|237704112\|ref\|ZP_04534593.1\| periplasmic protein [Escherichia sp. 3_2_53FAA], gi\|226902024\|gb\|EEH... gi\|26251263, gi\|... - gi\|26251263\|ref\|NP_757303.1\| periplasmic protein [Escherichia coli CFT073], gi\|26111696\|gb\|AAN83877....	157.0	[0..1]	[201..27]
gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| periplasmic protein [Escherichia coli O157:H7 str. Sakai], gi\|13364812\|... gi\|209748938, gi... - pir\|\|F91295 hyperosmotically inducible periplasmic protein [imported] - Escherichia coli (strain O15... gi\|254796371, gi... - gi\|254796371\|ref\|YP_003081208.1\| periplasmic protein [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|217325769, gi... - gi\|217325769\|ref\|ZP_03441853.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. TW145... gi\|208733588, gi... - gi\|208812311\|ref\|ZP_03253640.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|208728595, gi... - gi\|208808794\|ref\|ZP_03251131.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC420... gi\|209398467, gi... - gi\|209398467\|ref\|YP_002273896.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC41... gi\|208740775, gi... - gi\|208820652\|ref\|ZP_03260972.1\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC404... gi\|189374722, gi... - gi\|189404591\|ref\|ZP_02810025.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC869... gi\|189404198, gi... - gi\|189404198\|ref\|ZP_02787733.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC450... gi\|195937647 - gi\|195937647\|ref\|ZP_03083029.1\| periplasmic protein [Escherichia coli O157:H7 str. EC4024] gi\|189405596, gi... - gi\|189405596\|ref\|ZP_02822954.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC508... gi\|189010379, gi... - gi\|189010379\|ref\|ZP_02806671.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC407... gi\|188014908, gi... - gi\|188025091\|ref\|ZP_02776010.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC411... gi\|15834588, gi\|... - gi\|15834588\|ref\|NP_313361.1\| hyperosmotically inducible periplasmic protein [Escherichia coli O157:H... gi\|189402832, gi... - gi\|189402832\|ref\|ZP_02791663.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC448... gi\|189356062, gi... - gi\|189402347\|ref\|ZP_02781800.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC440... gi\|187768020, gi... - gi\|187776283\|ref\|ZP_02801654.2\| osmotically inducible protein Y [Escherichia coli O157:H7 str. EC419...	147.0	[0..1]	[201..1]
gi\|25501249 - pir\|\|H86136 hyperosmotically inducible periplasmic protein [imported] - Escherichia coli (strain O15... gi\|15804947, gi\|... - gi\|15804947\|ref\|NP_290989.1\| periplasmic protein [Escherichia coli O157:H7 EDL933], gi\|12519399\|gb\|A...	147.0	[0..1]	[201..1]
gi\|30065614, gi\|... - gi\|30065614\|ref\|NP_839785.1\| periplasmic protein [Shigella flexneri 2a str. 2457T], gi\|30043878\|gb\|A... gi\|218551677, gi... - gi\|218551677\|ref\|YP_002385469.1\| periplasmic protein [Escherichia fergusonii ATCC 35469], gi\|2183592... gi\|218698212, gi... - gi\|218698212\|ref\|YP_002405879.1\| periplasmic protein [Escherichia coli 55989], gi\|218354944\|emb\|CAV0... gi\|56384157, gi\|... - gi\|56480606\|ref\|NP_710115.2\| periplasmic protein [Shigella flexneri 2a str. 301], gi\|56384157\|gb\|AAN... gi\|110808165, gi... - gi\|110808165\|ref\|YP_691685.1\| periplasmic protein [Shigella flexneri 5 str. 8401], gi\|110617713\|gb\|A...	146.0	[0..1]	[201..1]
gi\|81243775, gi\|... - gi\|82779627\|ref\|YP_405976.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81243775\|gb\|ABB644...	144.0	[0..1]	[201..1]
gi\|75256287 - gi\|75256287\|ref\|ZP_00727959.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|75234538 - gi\|75234538\|ref\|ZP_00718879.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|75209579 - gi\|75209579\|ref\|ZP_00709797.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|83585283 - gi\|83585283\|ref\|ZP_00923931.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c... gi\|253326039, gi... - gi\|253774995\|ref\|YP_003037826.1\| transport-associated [Escherichia coli BL21(DE3)], gi\|253326039\|gb\|...	143.0	[0..3]	[201..1]
gi\|238910720 - gi\|238910720\|ref\|ZP_04654557.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Ten... gi\|197300648, gi... - gi\|197300648\|ref\|ZP_02659754.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197265158, gi... - gi\|197265158\|ref\|ZP_03165232.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197212802, gi... - gi\|197249099\|ref\|YP_002149502.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|195873719, gi... - gi\|195873719\|ref\|ZP_02698425.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205331515, gi... - gi\|205357531\|ref\|ZP_02570901.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205355281, gi... - gi\|205355281\|ref\|YP_002229082.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Ga... gi\|204927345, gi... - gi\|204927345\|ref\|ZP_03218547.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|197939235, gi... - gi\|198244719\|ref\|YP_002218436.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|161617872, gi... - gi\|161617872\|ref\|YP_001591837.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|194713397, gi... - gi\|194737895\|ref\|YP_002117476.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... gi\|194458140, gi... - gi\|194471776\|ref\|ZP_03077760.1\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|194450892, gi... - gi\|194450892\|ref\|YP_002048581.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar He... gi\|194403648, gi... - gi\|194444985\|ref\|YP_002043802.1\| osmotically inducible protein Y [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=osmY] [protein=hypothetical protein] [protein_id=YP_005240904.1] [location=4828712..4829329] gi\|214002589 - gi\|214002589\|ref\|ZP_03413324.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213854146 - gi\|213854146\|ref\|ZP_03382678.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213650115 - gi\|213650115\|ref\|ZP_03380168.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|207859687, gi... - gi\|207859687\|ref\|YP_002246338.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar En... gi\|205348961, gi... - gi\|205360578\|ref\|ZP_02684360.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|25512632, gi\|... - gi\|25512632\|pir\|\|AE1072 Putative periplasmic protein [imported] - Salmonella enterica subsp. enteric... gi\|205336631, gi... - gi\|205359367\|ref\|ZP_02669475.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|205335056, gi... - gi\|205358335\|ref\|ZP_02655264.2\| osmotically inducible protein Y [Salmonella enterica subsp. enterica... gi\|29144834, gi\|... - gi\|29144834\|ref\|NP_808176.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213613230 - gi\|213613230\|ref\|ZP_03371056.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|16767802, gi\|... - gi\|16767802\|ref\|NP_463417.1\| periplasmic protein [Salmonella typhimurium LT2], gi\|16423126\|gb\|AAL233... gi\|213581436 - gi\|213581436\|ref\|ZP_03363262.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213427565 - gi\|213427565\|ref\|ZP_03360315.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ... gi\|16763356 - gi\|16763356\|ref\|NP_458973.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213417862 - gi\|213417862\|ref\|ZP_03350964.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Typ...	143.0	[0..1]	[201..1]
gi\|75189084 - gi\|75189084\|ref\|ZP_00702351.1\| COG2823: Predicted periplasmic or secreted lipoprotein [Escherichia c...	142.0	[0..3]	[201..1]
gi\|62182979, gi\|... - gi\|62182979\|ref\|YP_219396.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Choler...	142.0	[0..1]	[201..1]
gi\|197096735, gi... - gi\|197365258\|ref\|YP_002144895.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|56130592, gi\|... - gi\|56416335\|ref\|YP_153410.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Paraty...	141.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTRLKISK TLLAVMLTSA VATGSAYAEN NAQTTNESAG QKVDSSMNKV GNFMDDSAIT  60
   61 AKVKAALVDH DNIKSTDISV KTDQKVVTLS GFVESQAQAE EAVKVAKGVE GVTSVSDKLH 120
  121 VRDAKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.167491
Match:	PF04972.8
Description:	No description for PF04972.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.928	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism

Predicted Domain #2

Region A:
Residues: [127-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVKGYAGDT ATTSEIKAKL LADDIVPSRH VKVETTDGVV QLSGTVDSQA QSDRAESIAK  60
   61 AVDGVKSVKN DLKTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.537602
Match:	PF04972.8
Description:	No description for PF04972.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.947	0.003	periplasmic space	d.58.18	Regulatory domain in the aminoacid metabolism

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits