YRC Public Data Repository - Protein Structure Prediction

Protein:	OPPD_ECOLI
Organism:	Escherichia coli
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|220931338, gi... - gi\|89211580\|ref\|ZP_01189938.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	424.0	[0..15]	[333..2]
gi\|51857651, gi\|... - gi\|51893962\|ref\|YP_076653.1\| oligopeptide ABC transporter ATP-binding protein [Symbiobacterium therm...	421.0	[0..12]	[337..6]
gi\|187431016, gi... - gi\|75179157\|ref\|ZP_00699175.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP...	415.0	[0..1]	[337..1]
gi\|117623461, gi... - gi\|117623461\|ref\|YP_852374.1\| oligopeptide transporter ATP-binding component [Escherichia coli APEC ... gi\|91210469, gi\|... - gi\|91210469\|ref\|YP_540455.1\| oligopeptide transporter ATP-binding component [Escherichia coli UTI89]... gi\|237705210, gi... - gi\|237705210\|ref\|ZP_04535691.1\| oligopeptide transporter ATP-binding component [Escherichia sp. 3_2_... gi\|215264552, gi... - gi\|215486480\|ref\|YP_002328911.1\| oligopeptide transporter ATP-binding component [Escherichia coli O1... gi\|218364943, gi... - gi\|218558174\|ref\|YP_002391087.1\| oligopeptide transporter ATP-binding component [Escherichia coli S8...	414.0	[0..1]	[337..1]
gi\|170020390, gi... - gi\|170020390\|ref\|YP_001725344.1\| oligopeptide transporter ATP-binding component [Escherichia coli AT... gi\|209918485, gi... - gi\|209918485\|ref\|YP_002292569.1\| oligopeptide transporter ATP-binding component [Escherichia coli SE... gi\|242377023, gi... - gi\|251784750\|ref\|YP_002999054.1\| hypothetical protein B21_01230 [Escherichia coli BL21], gi\|24237702... gi\|195182825 - gi\|195182825\|dbj\|BAG66397.1\| oligopeptide transporter subunit [Escherichia coli O111:H-] gi\|253973226, gi... - gi\|254161325\|ref\|YP_003044433.1\| oligopeptide transporter ATP-binding component [Escherichia coli B ... gi\|253977440, gi... - gi\|254288133\|ref\|YP_003053881.1\| oligopeptide transporter ATP-binding component [Escherichia coli BL... gi\|218694760, gi... - gi\|218694760\|ref\|YP_002402427.1\| oligopeptide transporter ATP-binding component [Escherichia coli 55... gi\|218704767, gi... - gi\|218704767\|ref\|YP_002412286.1\| oligopeptide transporter ATP-binding component [Escherichia coli UM... gi\|157078448, gi... - gi\|75190296\|ref\|ZP_00703563.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|194437102, gi... - gi\|83587384\|ref\|ZP_00926012.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|124528373, gi... - gi\|124528373\|ref\|ZP_01699683.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Escherichia ... gi\|188495534, gi... - gi\|75515141\|ref\|ZP_00737345.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|75257149, gi\|... - gi\|75257149\|ref\|ZP_00728685.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|193070000, gi... - gi\|75235246\|ref\|ZP_00719483.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|191166623, gi... - gi\|75230196\|ref\|ZP_00716697.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|194415833, gi... - gi\|75212677\|ref\|ZP_00712675.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|157160751, gi... - gi\|75195395\|ref\|ZP_00705465.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP...	414.0	[0..1]	[337..1]
gi\|89151429, gi\|... - gi\|89200603\|ref\|ZP_01179355.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	413.0	[0..19]	[336..4]
gi\|20515602, gi\|... - gi\|20807109\|ref\|NP_622280.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20807109 - gi\|20807109\|ref\|NP_622280.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	413.0	[0..17]	[331..5]
gi\|227886325, gi... - gi\|227886325\|ref\|ZP_04004130.1\| ABC superfamily ATP binding cassette transporter, ABC protein OppD [... gi\|254592116, gi... - gi\|254792716\|ref\|YP_003077553.1\| oligopeptide transporter subunit; ATP-binding component of ABC supe... gi\|75242046, gi\|... - gi\|75242046\|ref\|ZP_00725840.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|13361211, gi\|... - gi\|15831000\|ref\|NP_309773.1\| oligopeptide transporter ATP-binding component [Escherichia coli O157:H... gi\|110641475, gi... - gi\|110641475\|ref\|YP_669205.1\| oligopeptide transporter ATP-binding component [Escherichia coli 536],... gi\|110614796, gi... - gi\|110805248\|ref\|YP_688768.1\| oligopeptide transporter ATP-binding component [Shigella flexneri 5 st... gi\|188998628, gi... - gi\|188998628\|gb\|EDU67614.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|189372586, gi... - gi\|189372586\|gb\|EDU91002.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|168801558, gi... - gi\|189376302\|gb\|EDU94718.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|195939132 - gi\|195939132\|ref\|ZP_03084514.1\| oligopeptide transporter ATP-binding component [Escherichia coli O15... gi\|208806415, gi... - gi\|208806415\|ref\|ZP_03248752.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia ... gi\|208732464, gi... - gi\|208815816\|ref\|ZP_03256995.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia ... gi\|208822470, gi... - gi\|208822470\|ref\|ZP_03262789.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia ... gi\|209397436, gi... - gi\|209397436\|ref\|YP_002270177.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia... gi\|188015061, gi... - gi\|188015061\|gb\|EDU53183.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|168758170, gi... - gi\|189354972\|gb\|EDU73391.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|189365078, gi... - gi\|189365078\|gb\|EDU83494.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|189360092, gi... - gi\|189360092\|gb\|EDU78511.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|187767783, gi... - gi\|187767783\|gb\|EDU31627.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia coli... gi\|25297186, gi\|... - pir\|\|B90847 hypothetical protein ECs1746 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|26247575, gi\|... - gi\|26247575\|ref\|NP_753615.1\| oligopeptide transporter ATP-binding component [Escherichia coli CFT073... gi\|217328424, gi... - gi\|217328424\|ref\|ZP_03444506.1\| oligopeptide ABC transporter, ATP-binding protein OppD [Escherichia ... gi\|24112643, gi\|... - gi\|24112643\|ref\|NP_707153.1\| oligopeptide transporter ATP-binding component [Shigella flexneri 2a st... gi\|13361211, gi\|... - gi\|15831000\|ref\|NP_309773.1\| oligopeptide transporter ATP-binding component [Escherichia coli O157:H... gi\|30041015, gi\|... - gi\|30062767\|ref\|NP_836938.1\| oligopeptide transporter ATP-binding component [Shigella flexneri 2a st... gi\|15801472, gi\|... - gi\|15801472\|ref\|NP_287489.1\| oligopeptide transporter ATP-binding component [Escherichia coli O157:H...	413.0	[0..1]	[337..1]
gi\|74312418, gi\|... - gi\|74312418\|ref\|YP_310837.1\| oligopeptide transporter ATP-binding component [Shigella sonnei Ss046],...	413.0	[0..1]	[337..1]
gi\|10717146 - gi\|10717146\|gb\|AAG22037.1\|AF305387_4 OppD [Bacillus thuringiensis] gi\|42780377, gi\|... - gi\|42780377\|ref\|NP_977624.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC... gi\|228951667, gi... - gi\|228951667\|ref\|ZP_04113769.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228938403, gi... - gi\|228938403\|ref\|ZP_04101013.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228852668, gi... - gi\|228906920\|ref\|ZP_04070787.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228732237, gi... - gi\|229028957\|ref\|ZP_04185056.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH1... gi\|228775377, gi... - gi\|228984358\|ref\|ZP_04144538.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228781810, gi... - gi\|228977893\|ref\|ZP_04138274.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228788432, gi... - gi\|228971282\|ref\|ZP_04131910.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|206744093, gi... - gi\|206977665\|ref\|ZP_03238557.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus H... gi\|229108747, gi... - gi\|229108747\|ref\|ZP_04238355.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|217065388, gi... - gi\|217958763\|ref\|YP_002337311.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|229078481, gi... - gi\|229078481\|ref\|ZP_04211041.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|229068842, gi... - gi\|229068842\|ref\|ZP_04202137.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus F65... gi\|206968151, gi... - gi\|206968151\|ref\|ZP_03229107.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus A... gi\|228726274, gi... - gi\|229043033\|ref\|ZP_04190763.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH6... gi\|228633963, gi... - gi\|229149490\|ref\|ZP_04277725.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m15... gi\|229143896, gi... - gi\|229143896\|ref\|ZP_04272314.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228645630, gi... - gi\|229137973\|ref\|ZP_04266572.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228656984, gi... - gi\|229126595\|ref\|ZP_04255609.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228594086, gi... - gi\|229189375\|ref\|ZP_04316394.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|229177701, gi... - gi\|229177701\|ref\|ZP_04305076.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus 172... gi\|228611564, gi... - gi\|229171930\|ref\|ZP_04299497.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus MM3... gi\|229154852, gi... - gi\|229154852\|ref\|ZP_04282967.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|228588024, gi... - gi\|229195484\|ref\|ZP_04322252.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m12... gi\|218235469, gi... - gi\|218235469\|ref\|YP_002365970.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|221238969, gi... - gi\|222094911\|ref\|YP_002528971.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ...	413.0	[0..17]	[336..2]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE TLGIVGESGS  60
   61 GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPEHELNK LRAEQISMIF QDPMTSLNPY 120
  121 MRVGEQLMEV LMLHKNMSKA EAFEESVRML DAVKMPEARK RMKMYPHEFS GGMRQRVMIA 180
  181 MALLCRPKLL IADEPTTALD VTVQAQIMTL LNELKREFNT AIIMITHDLV VVAGICDKVL 240
  241 VMYAGRTMEY GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP 300
  301 FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits