YRC Public Data Repository - Protein Structure Prediction

Protein:	OMPT_ECOLI
Organism:	Escherichia coli
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OMPT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110640796, gi... - gi\|110640796\|ref\|YP_668524.1\| outer membrane protease [Escherichia coli 536], gi\|110342388\|gb\|ABG686... gi\|191172294, gi... - gi\|75240723\|ref\|ZP_00724630.1\| COG4571: Outer membrane protease [Escherichia coli F11], gi\|191172294...	449.0	[0..1]	[317..1]
gi\|217328006, gi... - gi\|217328006\|ref\|ZP_03444088.1\| protease 7 [Escherichia coli O157:H7 str. TW14588], gi\|217318433\|gb\|... gi\|209400792, gi... - gi\|209400792\|ref\|YP_002270107.1\| protease 7 [Escherichia coli O157:H7 str. EC4115], gi\|209162192\|gb\|... gi\|208737927, gi... - gi\|208822442\|ref\|ZP_03262761.1\| protease 7 [Escherichia coli O157:H7 str. EC4042], gi\|208737927\|gb\|E... gi\|168787668, gi... - gi\|189372473\|gb\|EDU90889.1\| protease 7 [Escherichia coli O157:H7 str. EC869], gi\|168787668\|ref\|ZP_02... gi\|168782526, gi... - gi\|189000019\|gb\|EDU69005.1\| protease 7 [Escherichia coli O157:H7 str. EC4076], gi\|168782526\|ref\|ZP_0... gi\|168775996, gi... - gi\|187768501\|gb\|EDU32345.1\| protease 7 [Escherichia coli O157:H7 str. EC4196], gi\|168775996\|ref\|ZP_0... gi\|254592047, gi... - gi\|254792647\|ref\|YP_003077484.1\| outer membrane protease VII (outer membrane protein 3b) [Escherichi... gi\|189360169, gi... - gi\|189360169\|gb\|EDU78588.1\| protease 7 [Escherichia coli O157:H7 str. EC4486], gi\|168771060\|ref\|ZP_0... gi\|208816305, gi... - gi\|208816305\|ref\|ZP_03257484.1\| protease 7 [Escherichia coli O157:H7 str. EC4045], gi\|208732953\|gb\|E... gi\|208727752, gi... - gi\|208807951\|ref\|ZP_03250288.1\| protease 7 [Escherichia coli O157:H7 str. EC4206], gi\|208727752\|gb\|E... gi\|195938822 - gi\|195938822\|ref\|ZP_03084204.1\| outer membrane protease [Escherichia coli O157:H7 str. EC4024] gi\|168800393, gi... - gi\|189377299\|gb\|EDU95715.1\| protease 7 [Escherichia coli O157:H7 str. EC508], gi\|168800393\|ref\|ZP_02... OMPT_ECO57 - Protease 7 OS=Escherichia coli O157:H7 GN=ompT PE=3 SV=1 gi\|25292958, gi\|... - pir\|\|H85694 outer membrane protein 3b (a), proteinase VII [imported] - Escherichia coli (strain O157... gi\|189367149, gi... - gi\|189367149\|gb\|EDU85565.1\| protease 7 [Escherichia coli O157:H7 str. EC4501], gi\|168762608\|ref\|ZP_0... gi\|15801391, gi\|... - gi\|15801391\|ref\|NP_287408.1\| outer membrane protease [Escherichia coli O157:H7 EDL933], gi\|12514863\|... gi\|189356419, gi... - gi\|189356419\|gb\|EDU74838.1\| protease 7 [Escherichia coli O157:H7 str. EC4401], gi\|168756531\|ref\|ZP_0... gi\|13361127, gi\|... - gi\|15830917\|ref\|NP_309690.1\| outer membrane protease [Escherichia coli O157:H7 str. Sakai], gi\|13361... gi\|188016021, gi... - gi\|188016021\|gb\|EDU54143.1\| protease 7 [Escherichia coli O157:H7 str. EC4113], gi\|168749793\|ref\|ZP_0...	448.0	[0..1]	[317..1]
gi\|26106943, gi\|... - gi\|26246544\|ref\|NP_752583.1\| outer membrane protease [Escherichia coli CFT073], gi\|26106943\|gb\|AAN79...	447.0	[0..1]	[317..1]
gi\|91071185, gi\|... - gi\|91209611\|ref\|YP_539597.1\| outer membrane protease [Escherichia coli UTI89], gi\|91071185\|gb\|ABE060... gi\|218557506, gi... - gi\|218557506\|ref\|YP_002390419.1\| outer membrane protease [Escherichia coli S88], gi\|218364275\|emb\|CA... gi\|237707464, gi... - gi\|237707464\|ref\|ZP_04537945.1\| outer membrane protein 3b [Escherichia sp. 3_2_53FAA], gi\|226898674\|... gi\|115511913, gi... - gi\|117622789\|ref\|YP_851702.1\| outer membrane protease [Escherichia coli APEC O1], gi\|115511913\|gb\|AB...	446.0	[0..1]	[317..1]
gi\|115512771, gi... - gi\|117623647\|ref\|YP_852560.1\| outer membrane protease [Escherichia coli APEC O1], gi\|115512771\|gb\|AB...	446.0	[0..1]	[317..5]
gi\|50983081 - gi\|50983081\|gb\|AAT92051.1\| hypothetical protein [Escherichia coli]	416.0	[0..18]	[317..1]
gi\|9507742, gi\|8... - gi\|9507742\|ref\|NP_061408.1\| outer membrane protease [Plasmid F], gi\|8918852\|dbj\|BAA97899.1\| ompP [Pl... OMPP_ECOLI, gi\|1... - Outer membrane protease OmpP OS=Escherichia coli (strain K12) GN=ompP PE=1 SV=2, Outer membrane prot... OMPP_ECOLI - Outer membrane protease ompP precursor (EC 3.4.23.-) - Escherichia coli	413.0	[0..1]	[317..1]
gi\|205328833, gi... - gi\|205328833\|gb\|EDZ15597.1\| protease 7 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str... lcl\|NC_016856.1_... - [gene=pgtE] [protein=outer membrane protease] [protein_id=YP_005238480.1] [location=complement(25576... PGTE_SALTY - Outer membrane protease E OS=Salmonella typhimurium GN=pgtE PE=3 SV=2 PGTE_SALTY - Outer membrane protease E OS=Salmonella typhimurium GN=pgtE PE=3 SV=2 PGTE_SALTY - Outer membrane protease E OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pgtE PE...	387.0	[0..1]	[317..1]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAKLLGIVL TTPIAISSFA STETLSFTPD NINADISLGT LSGKTKERVY LAEEGGRKVS  60
   61 QLDWKFNNAA IIKGAINWDL MPQISIGAAG WTTLGSRGGN MVDQDWMDSS NPGTWTDESR 120
  121 HPDTQLNYAN EFDLNIKGWL LNEPNYRLGL MAGYQESRYS FTARGGSYIY SSEEGFRDDI 180
  181 GSFPNGERAI GYKQRFKMPY IGLTGSYRYE DFELGGTFKY SGWVESSDND EHYDPGKRIT 240
  241 YRSKVKDQNY YSVAVNAGYY VTPNAKVYVE GAWNRVTNKK GNTSLYDHNN NTSDYSKNGA 300
  301 GIENYNFITT AGLKYTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	1i78A
Description:	Outer membrane protease OMPT
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits