YRC Public Data Repository - Protein Structure Prediction

Protein:	OMPC_ECOLI
Organism:	Escherichia coli
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OMPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|190904596, gi... - gi\|75231447\|ref\|ZP_00717816.1\| COG3203: Outer membrane protein (porin) [Escherichia coli B7A], gi\|19... gi\|157157896, gi... - gi\|75187011\|ref\|ZP_00700278.1\| COG3203: Outer membrane protein (porin) [Escherichia coli E24377A], g...	240.0	[0..1]	[367..1]
gi\|166079762, gi... - gi\|9714150\|emb\|CAC01403.1\| outer membrane porin C [Escherichia coli], gi\|241110593\|gb\|ACS66761.1\| ou...	238.0	[0..1]	[367..1]
gi\|117624409, gi... - gi\|117624409\|ref\|YP_853322.1\| outer membrane porin protein C [Escherichia coli APEC O1], gi\|11551353... gi\|218559133, gi... - gi\|218559133\|ref\|YP_002392046.1\| outer membrane porin protein C [Escherichia coli S88], gi\|218365902... gi\|226901056, gi... - gi\|237704690\|ref\|ZP_04535171.1\| outer membrane protein 1b [Escherichia sp. 3_2_53FAA], gi\|226901056\|... gi\|91073083, gi\|... - gi\|91211509\|ref\|YP_541495.1\| outer membrane porin protein C [Escherichia coli UTI89], gi\|91073083\|gb...	237.0	[0..1]	[367..1]
gi\|209747764, gi... - pir\|\|B85861 outer membrane protein 1b (Ibc) [imported] - Escherichia coli (strain O157:H7, substrain... gi\|168787126, gi... - gi\|189372906\|gb\|EDU91322.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|168780069, gi... - gi\|189002208\|gb\|EDU71194.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|187771088, gi... - gi\|187771088\|gb\|EDU34932.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|15802768, gi\|... - gi\|15802768\|ref\|NP_288795.1\| outer membrane porin protein C [Escherichia coli O157:H7 EDL933], gi\|12... gi\|168767840, gi... - gi\|189362821\|gb\|EDU81240.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|208820832, gi... - gi\|208820832\|ref\|ZP_03261152.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|208814376, gi... - gi\|208814376\|ref\|ZP_03255705.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208809380, gi... - gi\|208809380\|ref\|ZP_03251717.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|195935596 - gi\|195935596\|ref\|ZP_03080978.1\| outer membrane porin protein C [Escherichia coli O157:H7 str. EC4024... gi\|168749623, gi... - gi\|188016109\|gb\|EDU54231.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|13362573, gi\|... - gi\|15832358\|ref\|NP_311131.1\| outer membrane porin protein C [Escherichia coli O157:H7 str. Sakai], g... OMPC_ECO57 - Outer membrane protein C OS=Escherichia coli O157:H7 GN=ompC PE=3 SV=1 gi\|217319076, gi... - gi\|217326709\|ref\|ZP_03442792.1\| outer membrane protein C [Escherichia coli O157:H7 str. TW14588], gi... gi\|209400412, gi... - gi\|209400412\|ref\|YP_002271628.1\| outer membrane protein C [Escherichia coli O157:H7 str. EC4115], gi... gi\|254593514, gi... - gi\|254794114\|ref\|YP_003078951.1\| outer membrane porin protein C [Escherichia coli O157:H7 str. TW143...	234.0	[0..1]	[367..1]
gi\|82776181, gi\|... - gi\|82776181\|ref\|YP_402530.1\| outer membrane porin protein C [Shigella dysenteriae Sd197], gi\|8124032...	234.0	[0..1]	[367..1]
OMPC_ECOL6 - Outer membrane protein C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ompC PE=1... OMPC_ECOL6 - Outer membrane protein C OS=Escherichia coli O6 GN=ompC PE=1 SV=1 gi\|227887273, gi... - gi\|227887273\|ref\|ZP_04005078.1\| outer membrane porin protein C [Escherichia coli 83972], gi\|22783562...	233.0	[0..1]	[367..1]
gi\|25989456 - gi\|25989456\|gb\|AAL82724.1\| outer membrane protein [Edwardsiella tarda]	232.0	[0..2]	[367..42]
gi\|241110615 - gi\|241110615\|gb\|ACS66772.1\| outer membrane protein C [Escherichia coli] gi\|75259688, gi\|... - gi\|75259688\|ref\|ZP_00730990.1\| COG3203: Outer membrane protein (porin) [Escherichia coli E22], gi\|19... gi\|75211632, gi\|... - gi\|75211632\|ref\|ZP_00711711.1\| COG3203: Outer membrane protein (porin) [Escherichia coli B171], gi\|1...	232.0	[0..1]	[367..1]
gi\|110642425, gi... - gi\|110642425\|ref\|YP_670155.1\| outer membrane porin protein C [Escherichia coli 536], gi\|110344017\|gb...	232.0	[0..1]	[367..1]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKVLSLLV PALLVAGAAN AAEVYNKDGN KLDLYGKVDG LHYFSDNKDV DGDQTYMRLG  60
   61 FKGETQVTDQ LTGYGQWEYQ IQGNSAENEN NSWTRVAFAG LKFQDVGSFD YGRNYGVVYD 120
  121 VTSWTDVLPE FGGDTYGSDN FMQQRGNGFA TYRNTDFFGL VDGLNFAVQY QGKNGNPSGE 180
  181 GFTSGVTNNG RDALRQNGDG VGGSITYDYE GFGIGGAISS SKRTDAQNTA AYIGNGDRAE 240
  241 TYTGGLKYDA NNIYLAAQYT QTYNATRVGS LGWANKAQNF EAVAQYQFDF GLRPSLAYLQ 300
  301 SKGKNLGRGY DDEDILKYVD VGATYYFNKN MSTYVDYKIN LLDDNQFTRD AGINTDNIVA 360
  361 LGLVYQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	2j1nA
Description:	No description for 2j1nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits