YRC Public Data Repository - Protein Structure Prediction

Protein:	NLPC_ECOLI
Organism:	Escherichia coli
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NLPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|217318182, gi... - gi\|217328835\|ref\|ZP_03444916.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. TW14588]... gi\|209912283, gi... - gi\|209919024\|ref\|YP_002293108.1\| putative lipoprotein [Escherichia coli SE11], gi\|209912283\|dbj\|BAG7... gi\|218699724, gi... - gi\|218699724\|ref\|YP_002407353.1\| putative peptidase lipoprotein [Escherichia coli IAI39], gi\|2183697... gi\|218361044, gi... - gi\|218554276\|ref\|YP_002387189.1\| putative peptidase lipoprotein [Escherichia coli IAI1], gi\|21836104... gi\|218432305, gi... - gi\|218705208\|ref\|YP_002412727.1\| putative peptidase lipoprotein [Escherichia coli UMN026], gi\|218432... gi\|254793325, gi... - gi\|254793325\|ref\|YP_003078162.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|12515719, gi\|... - gi\|15802120\|ref\|NP_288142.1\| lipoprotein [Escherichia coli O157:H7 EDL933], gi\|12515719\|gb\|AAG56695.... gi\|15831669, gi\|... - gi\|15831669\|ref\|NP_310442.1\| lipoprotein [Escherichia coli O157:H7 str. Sakai], gi\|13361882\|dbj\|BAB3... gi\|170517468, gi... - gi\|170679750\|ref\|YP_001743540.1\| NlpC/P60 family lipoprotein [Escherichia coli SMS-3-5], gi\|17051746... gi\|168800112, gi... - gi\|189377581\|gb\|EDU95997.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|74311972, gi\|... - gi\|74311972\|ref\|YP_310391.1\| lipoprotein [Shigella sonnei Ss046], gi\|73855449\|gb\|AAZ88156.1\| lipopro... gi\|195937392 - gi\|195937392\|ref\|ZP_03082774.1\| lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|194435147, gi... - gi\|194435147\|ref\|ZP_03067381.1\| putative lipoprotein nlpC [Shigella dysenteriae 1012], gi\|194416611\|... gi\|208730978, gi... - gi\|208816635\|ref\|ZP_03257755.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4045],... gi\|208724738, gi... - gi\|208810222\|ref\|ZP_03252098.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4206],... gi\|209157457, gi... - gi\|209396057\|ref\|YP_002270778.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4115]... gi\|208739311, gi... - gi\|208819188\|ref\|ZP_03259508.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4042],... gi\|168749476, gi... - gi\|188016293\|gb\|EDU54415.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|168762229, gi... - gi\|189367469\|gb\|EDU85885.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189356173, gi... - gi\|189356173\|gb\|EDU74592.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|75236836, gi\|... - gi\|75236836\|ref\|ZP_00720907.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|187769370, gi... - gi\|187769370\|gb\|EDU33214.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|75256665, gi\|... - gi\|75256665\|ref\|ZP_00728282.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|189360593, gi... - gi\|189360593\|gb\|EDU79012.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|15831669, gi\|... - gi\|15831669\|ref\|NP_310442.1\| lipoprotein [Escherichia coli O157:H7], gi\|13361882\|dbj\|BAB35838.1\| lip... gi\|168789844, gi... - gi\|189370635\|gb\|EDU89051.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|209768944, gi... - pir\|\|C85779 lipoprotein [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pir\|\|G909... gi\|157159105, gi... - gi\|75190745\|ref\|ZP_00704012.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|189000259, gi... - gi\|189000259\|gb\|EDU69245.1\| lipoprotein, NlpC/P60 family [Escherichia coli O157:H7 str. EC4076], gi\|...	181.0	[0..1]	[154..1]
gi\|194412464, gi... - gi\|75209249\|ref\|ZP_00709493.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	181.0	[0..1]	[154..1]
gi\|218365347, gi... - gi\|218558578\|ref\|YP_002391491.1\| putative peptidase lipoprotein [Escherichia coli S88], gi\|218365347... gi\|91210922, gi\|... - gi\|91210922\|ref\|YP_540908.1\| lipoprotein NlpC [Escherichia coli UTI89], gi\|91072496\|gb\|ABE07377.1\| p... gi\|117623885, gi... - gi\|117623885\|ref\|YP_852798.1\| putative lipoprotein [Escherichia coli APEC O1], gi\|115513009\|gb\|ABJ01... gi\|190907951, gi... - gi\|75241413\|ref\|ZP_00725264.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|110641830, gi... - gi\|110641830\|ref\|YP_669560.1\| lipoprotein NlpC [Escherichia coli 536], gi\|110343422\|gb\|ABG69659.1\| p... gi\|215486883, gi... - gi\|215486883\|ref\|YP_002329314.1\| predicted lipoprotein [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|237705656, gi... - gi\|237705656\|ref\|ZP_04536137.1\| lipoprotein NlpC [Escherichia sp. 3_2_53FAA], gi\|226900413\|gb\|EEH866...	180.0	[0..1]	[154..1]
gi\|190902096, gi... - gi\|75228981\|ref\|ZP_00715568.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|218427217, gi... - gi\|218689653\|ref\|YP_002397865.1\| putative peptidase lipoprotein [Escherichia coli ED1a], gi\|21842721... gi\|227837443, gi... - gi\|227885870\|ref\|ZP_04003675.1\| lipoprotein NlpC [Escherichia coli 83972], gi\|227837443\|gb\|EEJ47909.... gi\|26108362, gi\|... - gi\|26247959\|ref\|NP_753999.1\| lipoprotein NlpC [Escherichia coli CFT073], gi\|26108362\|gb\|AAN80564.1\|A...	180.0	[0..1]	[154..1]
gi\|82777056, gi\|... - gi\|82777056\|ref\|YP_403405.1\| lipoprotein [Shigella dysenteriae Sd197], gi\|81241204\|gb\|ABB61914.1\| li...	180.0	[0..1]	[154..1]
gi\|157161169, gi... - gi\|75195781\|ref\|ZP_00705851.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	180.0	[0..1]	[154..1]
gi\|24112896, gi\|... - gi\|24112896\|ref\|NP_707406.1\| lipoprotein [Shigella flexneri 2a str. 301], gi\|24051842\|gb\|AAN43113.1\|... gi\|30063025, gi\|... - gi\|30063025\|ref\|NP_837196.1\| lipoprotein [Shigella flexneri 2a str. 2457T], gi\|30041274\|gb\|AAP17003.... gi\|110615030, gi... - gi\|110805482\|ref\|YP_689002.1\| lipoprotein [Shigella flexneri 5 str. 8401], gi\|110615030\|gb\|ABF03697....	180.0	[0..1]	[154..1]
gi\|81245335, gi\|... - gi\|82543924\|ref\|YP_407871.1\| lipoprotein [Shigella boydii Sb227], gi\|81245335\|gb\|ABB66043.1\| lipopro... gi\|187733660, gi... - gi\|75177394\|ref\|ZP_00697483.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	180.0	[0..1]	[154..1]
gi\|207857150, gi... - gi\|207857150\|ref\|YP_002243801.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224468672, gi... - gi\|224584145\|ref\|YP_002637943.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|205323632, gi... - gi\|205323632\|gb\|EDZ11471.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serovar S... gi\|205327751, gi... - gi\|205327751\|gb\|EDZ14515.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serovar 4... gi\|62127565, gi\|... - gi\|62179932\|ref\|YP_216349.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis s... gi\|56413670, gi\|... - gi\|56413670\|ref\|YP_150745.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|204927438, gi... - gi\|204927438\|ref\|ZP_03218639.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serov... gi\|205272715, gi... - gi\|205352934\|ref\|YP_002226735.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|197940248, gi... - gi\|198245732\|ref\|YP_002215783.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica sero... gi\|200390531, gi... - gi\|200390531\|ref\|ZP_03217142.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serov... gi\|16764694, gi\|... - gi\|16764694\|ref\|NP_460309.1\| lipoprotein [Salmonella typhimurium LT2], gi\|16419862\|gb\|AAL20268.1\| li... gi\|197243535, gi... - gi\|197265280\|ref\|ZP_03165354.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Saintpaul... gi\|197362594, gi... - gi\|197362594\|ref\|YP_002142231.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|194710894, gi... - gi\|194735392\|ref\|YP_002114360.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Schwarze... gi\|197211975, gi... - gi\|197248272\|ref\|YP_002146694.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Agona st... gi\|194449698, gi... - gi\|194449698\|ref\|YP_002045350.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|194457293, gi... - gi\|194470929\|ref\|ZP_03076913.1\| NlpC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... lcl\|NC_016856.1_... - [gene=nlpC] [protein=lipoprotein] [protein_id=YP_005237205.1] [location=1431996..1432460] gi\|195634583, gi... - gi\|195634583\|gb\|EDX52935.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Newport str. ... gi\|194446694, gi... - gi\|194446694\|ref\|YP_002040600.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica sero... gi\|168240846, gi... - gi\|205339621\|gb\|EDZ26385.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serovar H... gi\|168263836, gi... - gi\|205347558\|gb\|EDZ34189.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serovar H... gi\|205332313, gi... - gi\|205332313\|gb\|EDZ19077.1\| putative lipoprotein nlpC [Salmonella enterica subsp. enterica serovar K... gi\|238910841 - gi\|238910841\|ref\|ZP_04654678.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|197287777, gi... - gi\|197287777\|gb\|EDY27167.1\| NlpC (ORF-17) [Salmonella enterica subsp. enterica serovar Schwarzengrun...	179.0	[0..1]	[154..1]
gi\|213586726 - gi\|213586726\|ref\|ZP_03368552.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213428586 - gi\|213428586\|ref\|ZP_03361336.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213418069 - gi\|213418069\|ref\|ZP_03351143.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|16760551 - gi\|16760551\|ref\|NP_456168.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|214003072 - gi\|214003072\|ref\|ZP_03413807.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|16502847, gi\|... - gi\|25306436\|pir\|\|AH0704 probable lipoprotein nlpC [imported] - Salmonella enterica subsp. enterica s... gi\|213855704 - gi\|213855704\|ref\|ZP_03383944.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|29141688, gi\|... - gi\|29141688\|ref\|NP_805030.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|213650477 - gi\|213650477\|ref\|ZP_03380530.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty...	177.0	[0..1]	[154..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFCLILITA LLLAGCSHHK APPPNARLSD SITVIAGLND QLQSWHGTPY RYGGMTRRGV  60
   61 DCSGFVVVTM RDRFDLQLPR ETKQQASIGT QIDKDELLPG DLVFFKTGSG QNGLHVGIYD 120
  121 TNNQFIHAST SKGVMRSSLD NVYWQKNFWQ ARRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	2evrA
Description:	Crystal structure of (53686717) from Nostoc punctiforme PCC 73102 at 1.60 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.663734372840576	bayes_pls_golite062009
hydrolase activity	0.216867729255903	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: