YRC Public Data Repository - Protein Structure Prediction

Protein:	NIFU_ECOLI
Organism:	Escherichia coli
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIFU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	197.0	[0..1]	[128..1]
gi\|58698557, gi\|... - gi\|58698557\|ref\|ZP_00373458.1\| FeS cluster assembly scaffold IscU [Wolbachia endosymbiont of Drosoph... gi\|42410460, gi\|... - gi\|42520720\|ref\|NP_966635.1\| scaffold protein [Wolbachia endosymbiont of Drosophila melanogaster], g... gi\|225592569, gi... - gi\|225630588\|ref\|YP_002727379.1\| NifU domain protein [Wolbachia sp. wRi], gi\|225592569\|gb\|ACN95588.1...	196.0	[0..1]	[127..1]
gi\|58419329, gi\|... - gi\|58585013\|ref\|YP_198586.1\| scaffold protein [Wolbachia endosymbiont strain TRS of Brugia malayi], ...	196.0	[0..1]	[125..1]
gi\|115365114, gi... - gi\|115377899\|ref\|ZP_01465085.1\| FeS cluster assembly scaffold IscU [Stigmatella aurantiaca DW4/3-1],...	196.0	[0..1]	[128..1]
gi\|108464265, gi... - gi\|108760385\|ref\|YP_633158.1\| scaffold protein [Myxococcus xanthus DK 1622], gi\|108464265\|gb\|ABF8945...	196.0	[0..1]	[128..1]
gi\|33573345 - gi\|33573345\|emb\|CAE37329.1\| [Fe-S] cluster formation/repair protein [Bordetella parapertussis] gi\|33596644 - gi\|33596644\|ref\|NP_884287.1\| scaffold protein [Bordetella parapertussis 12822] gi\|33575695, gi\|... - gi\|33601260\|ref\|NP_888820.1\| scaffold protein [Bordetella bronchiseptica RB50], gi\|33575695\|emb\|CAE3... gi\|33572510, gi\|... - gi\|33592862\|ref\|NP_880506.1\| scaffold protein [Bordetella pertussis Tohama I], gi\|33572510\|emb\|CAE42...	194.0	[0..1]	[128..1]
gi\|193223099, gi... - gi\|194289264\|ref\|YP_002005171.1\| scaffold protein [Cupriavidus taiwanensis], gi\|193223099\|emb\|CAQ691... gi\|113525955, gi... - gi\|113867179\|ref\|YP_725668.1\| scaffold protein [Ralstonia eutropha H16], gi\|113525955\|emb\|CAJ92300.1...	194.0	[0..1]	[128..1]
gi\|126638539, gi... - gi\|78369006\|ref\|ZP_00839185.1\| FeS cluster assembly scaffold IscU [Shewanella sp. PV-4], gi\|78358967...	194.0	[0..1]	[126..1]
gi\|1075072 - gi\|1075072\|pir\|\|C64064 iron-sulfur cofactor synthesis protein nifU homolog HI0377 [similarity] - Hae...	194.0	[0..1]	[126..26]
gi\|161362058, gi... - gi\|161612694\|ref\|YP_001586659.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Parat... gi\|167549431, gi... - gi\|205325314\|gb\|EDZ13153.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|167992667, gi... - gi\|205329085\|gb\|EDZ15849.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168232115, gi... - gi\|205333708\|gb\|EDZ20472.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|238912663 - gi\|238912663\|ref\|ZP_04656500.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Tennes... gi\|160863650, gi... - gi\|161502303\|ref\|YP_001569415.1\| scaffold protein [Salmonella enterica subsp. arizonae serovar 62:z4... gi\|197938255, gi... - gi\|198243739\|ref\|YP_002216607.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|200388352, gi... - gi\|200388352\|ref\|ZP_03214964.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|16761456 - gi\|16761456\|ref\|NP_457073.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi str... gi\|204929622, gi... - gi\|204929622\|ref\|ZP_03220696.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|205273422, gi... - gi\|205353641\|ref\|YP_002227442.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Galli... gi\|194735413, gi... - gi\|194735413\|ref\|YP_002115604.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=nifU] [protein=scaffold protein] [protein_id=YP_005238644.1] [location=complement(2732675..273... gi\|197248479, gi... - gi\|197248479\|ref\|YP_002147497.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|197262104, gi... - gi\|197262104\|ref\|ZP_03162178.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|197361515, gi... - gi\|197361515\|ref\|YP_002141151.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Parat... gi\|168821478, gi... - gi\|205341949\|gb\|EDZ28713.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|194402304, gi... - gi\|194443641\|ref\|YP_002041803.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. ente... gi\|62128739, gi\|... - gi\|62181106\|ref\|YP_217523.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Choleraes... gi\|194448547, gi... - gi\|194448547\|ref\|YP_002046603.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Heide... gi\|56126837, gi\|... - gi\|56412580\|ref\|YP_149655.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|194458472, gi... - gi\|194472108\|ref\|ZP_03078092.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enter... gi\|197288876, gi... - gi\|197288876\|gb\|EDY28249.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|205337684, gi... - gi\|205337684\|gb\|EDZ24448.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168261416, gi... - gi\|205349671\|gb\|EDZ36302.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|168466702, gi... - gi\|195630678\|gb\|EDX49270.1\| FeS cluster assembly scaffold IscU [Salmonella enterica subsp. enterica ... gi\|213855573 - gi\|213855573\|ref\|ZP_03383813.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|224582918, gi... - gi\|224582918\|ref\|YP_002636716.1\| NifU-like protein [Salmonella enterica subsp. enterica serovar Para... gi\|213425312 - gi\|213425312\|ref\|ZP_03358062.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213580752 - gi\|213580752\|ref\|ZP_03362578.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213610150 - gi\|213610150\|ref\|ZP_03369976.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213646426 - gi\|213646426\|ref\|ZP_03376479.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16765862, gi\|... - gi\|16765862\|ref\|NP_461477.1\| scaffold protein [Salmonella typhimurium LT2], gi\|16421087\|gb\|AAL21436.... gi\|207857950, gi... - gi\|207857950\|ref\|YP_002244601.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Enter... gi\|29136472, gi\|... - gi\|29140847\|ref\|NP_804189.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213028535 - gi\|213028535\|ref\|ZP_03342982.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213161572 - gi\|213161572\|ref\|ZP_03347282.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|25285919, gi\|... - gi\|25285919\|pir\|\|AE0824 NifU-like protein [imported] - Salmonella enterica subsp. enterica serovar T... gi\|213419977 - gi\|213419977\|ref\|ZP_03353043.1\| scaffold protein [Salmonella enterica subsp. enterica serovar Typhi ...	194.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSEKVIDH YENPRNVGSF DNNDENVGSG MVGAPACGDV MKLQIKVNDE GIIEDARFKT  60
   61 YGCGSAIASS SLVTEWVKGK SLDEAQAIKN TDIAEELELP PVKIHCSILA EDAIKAAIAD 120
  121 YKSKREAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits