YRC Public Data Repository - Protein Structure Prediction

Protein:	MSBB_ECOLI
Organism:	Escherichia coli
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSBB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90329084, gi\|... - gi\|90409731\|ref\|ZP_01217748.1\| putative lipid A biosynthesis lauroyl acyltransferase [Photobacterium...	313.0	[0..8]	[315..3]
gi\|26107594, gi\|... - gi\|26247193\|ref\|NP_753233.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli CFT073],... gi\|237706961, gi... - gi\|237706961\|ref\|ZP_04537442.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia sp. 3_2_53... gi\|91210205, gi\|... - gi\|91210205\|ref\|YP_540191.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli UTI89], ...	311.0	[0..3]	[314..17]
gi\|54303638, gi\|... - gi\|54303638\|ref\|YP_133631.1\| putative lipid A biosynthesis lauroyl acyltransferase [Photobacterium p...	310.0	[0..8]	[315..3]
gi\|110805073, gi... - gi\|110805073\|ref\|YP_688593.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 5 str.... gi\|24112466, gi\|... - ref\|NP_706976.1\| hypothetical protein SF1061 [Shigella flexneri 2a str. 301], gb\|AAN42683.1\| orf, c...	309.0	[0..3]	[314..17]
gi\|161486253 - gi\|161486253\|ref\|NP_753233.2\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli CFT073] gi\|218557936, gi... - gi\|218557936\|ref\|YP_002390849.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli S88]... gi\|218689008, gi... - gi\|218689008\|ref\|YP_002397220.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli ED1a... gi\|227836793, gi... - gi\|227886589\|ref\|ZP_04004394.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli 83972... gi\|117623241, gi... - gi\|117623241\|ref\|YP_852154.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli APEC O1...	306.0	[0..12]	[314..5]
gi\|110641231, gi... - gi\|110641231\|ref\|YP_668961.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli 536], g... gi\|191172396, gi... - gi\|75240651\|ref\|ZP_00724568.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli F11], gi...	305.0	[0..12]	[314..5]
gi\|74311616, gi\|... - gi\|74311616\|ref\|YP_310035.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella sonnei Ss046], g...	305.0	[0..12]	[314..5]
gi\|193064511, gi... - gi\|75257491\|ref\|ZP_00728994.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli E22], gi... gi\|208808825, gi... - gi\|208808825\|ref\|ZP_03251162.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:... gi\|188491105, gi... - gi\|75513499\|ref\|ZP_00735903.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli 53638], ... gi\|195935443 - gi\|195935443\|ref\|ZP_03080825.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:... gi\|82544480, gi\|... - gi\|82544480\|ref\|YP_408427.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella boydii Sb227], g... gi\|124531156, gi... - gi\|124531156\|ref\|ZP_01701511.1\| lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase [Esch... gi\|208822231, gi... - gi\|208822231\|ref\|ZP_03262550.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:... gi\|208731500, gi... - gi\|208814852\|ref\|ZP_03256031.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:... gi\|209911567, gi... - gi\|209918308\|ref\|YP_002292392.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli SE11... gi\|209159377, gi... - gi\|209397977\|ref\|YP_002269900.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157... gi\|218553633, gi... - gi\|218553633\|ref\|YP_002386546.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli IAI1... gi\|217328481, gi... - gi\|217328481\|ref\|ZP_03444563.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:... gi\|189363311, gi... - gi\|189363311\|gb\|EDU81730.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|194438061, gi... - gi\|83586411\|ref\|ZP_00925045.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli 101-1], ... gi\|189365518, gi... - gi\|189365518\|gb\|EDU83934.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|187730479, gi... - gi\|75175820\|ref\|ZP_00696015.1\| COG1560: Lauroyl/myristoyl acyltransferase [Shigella boydii BS512], g... gi\|188999100, gi... - gi\|188999100\|gb\|EDU68086.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|157077766, gi... - gi\|75190113\|ref\|ZP_00703380.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli E24377A]... gi\|168773899, gi... - gi\|187770433\|gb\|EDU34277.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|157066261, gi... - gi\|75195239\|ref\|ZP_00705309.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli HS], gi\|... gi\|189375941, gi... - gi\|189375941\|gb\|EDU94357.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|194428468, gi... - gi\|75210328\|ref\|ZP_00710490.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli B171], g... gi\|168789989, gi... - gi\|189370456\|gb\|EDU88872.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|191168459, gi... - gi\|75228323\|ref\|ZP_00714973.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli B7A], gi... gi\|170080705, gi... - gi\|170080705\|ref\|YP_001730025.1\| lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Escher... gi\|75235941, gi\|... - gi\|75235941\|ref\|ZP_00720078.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli E110019]... gi\|169755478, gi... - gi\|170020550\|ref\|YP_001725504.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli ATCC... gi\|218704463, gi... - gi\|218704463\|ref\|YP_002411982.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli UMN0... gi\|89107900, gi\|... - gi\|89107900\|ref\|AP_001680.1\| lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Escherichi... LPXL_ECO57 - Lipid A biosynthesis lauroyltransferase OS=Escherichia coli O157:H7 GN=lpxL PE=3 SV=1 EG10464 - lauryl-acyl carrier protein (ACP)-dependent acyltransferase / Lipid A synthesis, KDO2-lipid IVA laur... gi\|15801171, gi\|... - gi\|15801171\|ref\|NP_287188.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 ... gi\|13360896, gi\|... - gi\|15830686\|ref\|NP_309459.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 ... HTRB_ECOLI - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) (Heat shock protein B) - Escherichia coli gi\|189358345, gi... - gi\|189358345\|gb\|EDU76764.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|238900308, gi... - gi\|238900308\|ref\|YP_002926104.1\| lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Escher... gi\|188018026, gi... - gi\|188018026\|gb\|EDU56148.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli O157:H7 s... gi\|251784585, gi... - gi\|251784585\|ref\|YP_002998889.1\| hypothetical protein B21_01058 [Escherichia coli BL21], gi\|24237685... gi\|253773922, gi... - gi\|254287968\|ref\|YP_003053716.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli BL21... gi\|254161160, gi... - gi\|254161160\|ref\|YP_003044268.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli B st... gi\|73671287\|gb\|A... - HtrB [Escherichia coli] gi\|254792436, gi... - gi\|254792436\|ref\|YP_003077273.1\| lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Escher... EG10464 - lauryl-acyl carrier protein (ACP)-dependent acyltransferase / Lipid A synthesis, KDO2-lipid IVA laur...	304.0	[0..12]	[314..5]
gi\|30062592, gi\|... - gi\|30062592\|ref\|NP_836763.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 2a str.... gi\|56479807, gi\|... - gi\|56479807\|ref\|NP_706976.2\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 2a str....	304.0	[0..12]	[314..5]
gi\|81241660, gi\|... - gi\|82777512\|ref\|YP_403861.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella dysenteriae Sd19...	303.0	[0..12]	[314..5]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKKNNSEY IPEFDKSFRH PRYWGAWLGV AAMAGIALTP PKFRDPILAR LGRFAGRLGK  60
   61 SSRRRALINL SLCFPERSEA EREAIVDEMF ATAPQAMAMM AELAIRGPEK IQPRVDWQGL 120
  121 EIIEEMRRNN EKVIFLVPHG WAVDIPAMLM ASQGQKMAAM FHNQGNPVFD YVWNTVRRRF 180
  181 GGRLHARNDG IKPFIQSVRQ GYWGYYLPDQ DHGPEHSEFV DFFATYKATL PAIGRLMKVC 240
  241 RARVVPLFPI YDGKTHRLTI QVRPPMDDLL EADDHTIARR MNEEVEIFVG PRPEQYTWIL 300
  301 KLLKTRKPGE IQPYKRKDLY PIK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.28
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits