YRC Public Data Repository - Protein Structure Prediction

Protein:	MENB_ECOLI
Organism:	Escherichia coli
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MENB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|33149130, gi\|... - gi\|33152905\|ref\|NP_874258.1\| naphthoate synthase [Haemophilus ducreyi 35000HP], gi\|33149130\|gb\|AAP96...	316.0	[0..1]	[285..1]
gi\|46143479 - gi\|46143479\|ref\|ZP_00135155.2\| COG0447: Dihydroxynaphthoic acid synthase [Actinobacillus pleuropneum... gi\|126098078, gi... - gi\|126209286\|ref\|YP_001054511.1\| naphthoate synthase [Actinobacillus pleuropneumoniae L20], gi\|12609... gi\|165877362, gi... - gi\|165977261\|ref\|YP_001652854.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 3 str.... gi\|190151179, gi... - gi\|190151179\|ref\|YP_001969704.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 7 str....	316.0	[0..1]	[285..1]
gi\|52307899, gi\|... - gi\|52425847\|ref\|YP_088984.1\| naphthoate synthase [Mannheimia succiniciproducens MBEL55E], gi\|5230789...	314.0	[0..1]	[285..1]
gi\|224583208, gi... - gi\|224583208\|ref\|YP_002637006.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... gi\|214003152 - gi\|214003152\|ref\|ZP_03413887.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|29141071, gi\|... - gi\|29141071\|ref\|NP_804413.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16761233 - gi\|16761233\|ref\|NP_456850.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|25291829, gi\|... - gi\|25291829\|pir\|\|AB0795 naphthoate synthase (EC 4.1.3.36) [imported] - Salmonella enterica subsp. en... MENB_SALTY - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70072... gi\|168242426, gi... - gi\|205338272\|gb\|EDZ25036.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Heidelb... lcl\|NC_016856.1_... - [gene=menB] [protein=naphthoate synthase] [protein_id=YP_005238381.1] [location=complement(2465552..... gi\|168237325, gi... - gi\|197289652\|gb\|EDY29015.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Schwarz... gi\|205335686, gi... - gi\|205335686\|gb\|EDZ22450.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Kentuck... gi\|167992643, gi... - gi\|205329235\|gb\|EDZ15999.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|194402127, gi... - gi\|194443464\|ref\|YP_002041568.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ne... gi\|205344887, gi... - gi\|205344887\|gb\|EDZ31651.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Weltevr... gi\|168465992, gi... - gi\|195631525\|gb\|EDX50085.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Newport... gi\|168261676, gi... - gi\|205349651\|gb\|EDZ36282.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Hadar s... gi\|167549697, gi... - gi\|205325360\|gb\|EDZ13199.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Saintpa... gi\|161612968, gi... - gi\|161612968\|ref\|YP_001586933.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... gi\|213052924 - gi\|213052924\|ref\|ZP_03345802.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213024569 - gi\|213024569\|ref\|ZP_03339016.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|206709528, gi... - gi\|207857725\|ref\|YP_002244376.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar En... gi\|204929052, gi... - gi\|204929052\|ref\|ZP_03220195.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Jav... gi\|213854895 - gi\|213854895\|ref\|ZP_03383135.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213648582 - gi\|213648582\|ref\|ZP_03378635.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213427029 - gi\|213427029\|ref\|ZP_03359779.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213419276 - gi\|213419276\|ref\|ZP_03352342.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|56412795, gi\|... - gi\|56412795\|ref\|YP_149870.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Paraty... gi\|197251548, gi... - gi\|197251548\|ref\|YP_002147263.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ag... gi\|194736334, gi... - gi\|194736334\|ref\|YP_002115377.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Sc... gi\|194456292, gi... - gi\|194469928\|ref\|ZP_03075912.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ken... gi\|194407937, gi... - gi\|194449633\|ref\|YP_002046361.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar He... gi\|199604287, gi... - gi\|200387189\|ref\|ZP_03213801.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Vir... gi\|198243876, gi... - gi\|198243876\|ref\|YP_002216375.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Du... gi\|197093205, gi... - gi\|197361729\|ref\|YP_002141365.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... MENB_SALTY - 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium GN=menB PE=1 SV=1 gi\|197240069, gi... - gi\|197261814\|ref\|ZP_03161888.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Sai...	314.0	[0..1]	[285..1]
gi\|74276945, gi\|... - gi\|75429737\|ref\|ZP_00732399.1\| dihydroxynaphthoic acid synthase [Actinobacillus succinogenes 130Z], ...	314.0	[0..1]	[285..1]
MENB_PASMU - Naphthoate synthase OS=Pasteurella multocida GN=menB PE=3 SV=1 MENB_PASMU - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1	314.0	[0..1]	[285..1]
gi\|32029562, gi\|... - gi\|32029562\|ref\|ZP_00132565.1\| COG0447: Dihydroxynaphthoic acid synthase [Haemophilus somnus 2336], ...	313.0	[0..1]	[285..1]
gi\|62128510, gi\|... - gi\|62180877\|ref\|YP_217294.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Choler...	312.0	[0..1]	[285..1]
gi\|77975453 - gi\|77975453\|ref\|ZP_00830988.1\| COG0447: Dihydroxynaphthoic acid synthase [Yersinia frederiksenii ATC...	312.0	[0..1]	[285..274]
gi\|12516610, gi\|... - gi\|15802813\|ref\|NP_288840.1\| naphthoate synthase [Escherichia coli O157:H7 EDL933], gi\|12516610\|gb\|A... gi\|25291822 - pir\|\|G85866 dihydroxynaphtoic acid synthetase [imported] - Escherichia coli (strain O157:H7, substra...	312.0	[0..1]	[285..1]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYPDEAMLY APVEWHDCSE GFEDIRYEKS TDGIAKITIN RPQVRNAFRP LTVKEMIQAL  60
   61 ADARYDDNIG VIILTGAGDK AFCSGGDQKV RGDYGGYKDD SGVHHLNVLD FQRQIRTCPK 120
  121 PVVAMVAGYS IGGGHVLHMM CDLTIAADNA IFGQTGPKVG SFDGGWGASY MARIVGQKKA 180
  181 REIWFLCRQY DAKQALDMGL VNTVVPLADL EKETVRWCRE MLQNSPMALR CLKAALNADC 240
  241 DGQAGLQELA GNATMLFYMT EEGQEGRNAF NQKRQPDFSK FKRNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.221849
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits