YRC Public Data Repository - Protein Structure Prediction

Protein:	MENA_ECOLI
Organism:	Escherichia coli
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MENA_ECOLI.

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	190.0	[0..1]	[307..968]
gi\|68202151, gi\|... - gi\|68230245\|ref\|ZP_00569431.1\| Protoheme IX farnesyltransferase [Frankia sp. EAN1pec], gi\|68202151\|g...	180.0	[0..3]	[293..229]
gi\|73956024 - gi\|73956024\|ref\|XP_546634.2\| PREDICTED: similar to heme A:farnesyltransferase [Canis familiaris]	177.0	[0..11]	[284..499]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	175.0	[0..7]	[306..117]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	174.0	[0..9]	[307..80]
gi\|62202788 - gi\|62202788\|gb\|AAH93303.1\| LOC553384 protein [Danio rerio]	174.0	[0..1]	[284..148]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	173.0	[0..9]	[307..86]
gi\|46100862, gi\|... - gi\|71023219\|ref\|XP_761839.1\| hypothetical protein UM05692.1 [Ustilago maydis 521], ref\|XP_403307.1\| ...	172.0	[0..1]	[300..1207]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQQISRTQ AWLESLRPKT LPLAFAAIIV GTALAWWQGH FDPLVALLAL ITAGLLQILS  60
   61 NLANDYGDAV KGSDKPDRIG PLRGMQKGVI TQQEMKRALI ITVVLICLSG LALVAVACHT 120
  121 LADFVGFLIL GGLSIIAAIT YTVGNRPYGY IGLGDISVLV FFGWLSVMGS WYLQAHTLIP 180
  181 ALILPATACG LL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATAVLNINNL RDINSDRENG KNTLVVRLGE VNARRYHACL LMGSLVCLAL FNLFSLHSLW  60
   61 GWLFLLAAPL LVKQARYVMR EMDPVAMRPM LERTVKGALL TNLLFVLGIF LSQWAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits