YRC Public Data Repository - Protein Structure Prediction

Protein:	MDFA_ECOLI
Organism:	Escherichia coli
Length:	410 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|39944294, gi\|... - gi\|39944294\|ref\|XP_361684.1\| hypothetical protein MGG_04158 [Magnaporthe grisea 70-15], gb\|EAA50399....	198.0	[0..3]	[409..123]
gi\|50260260, gi\|... - gi\|50260260\|gb\|EAL22919.1\| hypothetical protein CNBA6880 [Cryptococcus neoformans var. neoformans B-...	192.0	[0..8]	[408..102]
gi\|49650092 - gi\|49650092\|emb\|CAG79818.1\| YALI0E21241p [Yarrowia lipolytica] gi\|49650092, gi\|... - gi\|50553624\|ref\|XP_504223.1\| YALI0E21241p [Yarrowia lipolytica], gi\|49650092\|emb\|CAG79818.1\| unnamed...	187.0	[0..3]	[406..125]
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	187.0	[0..4]	[402..289]
gi\|218202668 - gi\|218202668\|gb\|EEC85095.1\| hypothetical protein OsI_32467 [Oryza sativa Indica Group] PHT44_ORYSJ - Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1	184.0	[0..13]	[398..179]
gi\|85092504 - gi\|85092504\|ref\|XP_959425.1\| hypothetical protein NCU06077 [Neurospora crassa OR74A] gi\|32410903, gi\|... - gi\|32410903\|ref\|XP_325932.1\| hypothetical protein [Neurospora crassa], gi\|28920843\|gb\|EAA30189.1\| co...	179.0	[0..2]	[400..142]
gi\|68389434 - gi\|68389434\|ref\|XP_691920.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent inorga...	177.0	[0..13]	[404..141]
gi\|42549526, gi\|... - gi\|46111993\|ref\|XP_383045.1\| hypothetical protein FG02869.1 [Gibberella zeae PH-1], gi\|42549526\|gb\|E...	177.0	[0..3]	[408..63]
gi\|90305550, gi\|... - gi\|90305550\|gb\|EAS35181.1\| hypothetical protein CIMG_00535 [Coccidioides immitis RS], gi\|119192316\|r...	176.0	[0..3]	[400..59]
gi\|66844530, gi\|... - gi\|70982756\|ref\|XP_746906.1\| MFS multidrug transporter [Aspergillus fumigatus Af293], gi\|66844530\|gb...	175.0	[0..2]	[408..175]

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Predicted Domain #1

Region A:
Residues: [1-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNKLASGAR LGRQALLFPL CLVLYEFSTY IGNDMIQPGM LAVVEQYQAG IDWVPTSMTA  60
   61 YLAGGMFLQW LLGPLSDRIG RRPVMLAGVV WFIVTCLAIL LAQNIEQFTL LRFLQGISLC 120
  121 FIGAVGYAAI QESFEEAVCI KITALMANVA LIAPLLGPLV GAAWIHVLPW EGMFVLFAAL 180
  181 AAISFFGLQR AMPETATRIG EKLSLKELGR DYKLVLKNGR FVAGALALGF VSLPLLAWIA 240
  241 QSPIIIITGE QLSSYEYGLL QVPIFGALIA GNLLLARLTS RRTVRSLIIM GGWPIMIGLL 300
  301 VAAAATVISS HAYLWMTAGL SIYAFGIGLA NAGLVRLTLF ASDMSKGTVS AAMGMLQMLI 360
  361 FTVGIEISKH AWLNGGNGLF NLFNLVNGIL WLSLMVIFLK DKQMGNSHEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits