YRC Public Data Repository - Protein Structure Prediction

Protein:	MALQ_ECOLI
Organism:	Escherichia coli
Length:	694 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MALQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82545773, gi\|... - gi\|82545773\|ref\|YP_409720.1\| 4-alpha-glucanotransferase [Shigella boydii Sb227], gi\|81247184\|gb\|ABB6...	864.0	[0..1]	[694..1]
gi\|187732190, gi... - gi\|75179965\|ref\|ZP_00699952.1\| COG1640: 4-alpha-glucanotransferase [Shigella boydii BS512], gi\|18773...	862.0	[0..1]	[694..1]
gi\|24114683, gi\|... - gi\|24114683\|ref\|NP_709193.1\| 4-alpha-glucanotransferase [Shigella flexneri 2a str. 301], gi\|24053891... gi\|30065299, gi\|... - gi\|30065299\|ref\|NP_839470.1\| 4-alpha-glucanotransferase [Shigella flexneri 2a str. 2457T], gi\|300435...	856.0	[0..1]	[684..1]
gi\|83571661, gi\|... - gi\|83571661\|ref\|ZP_00923101.1\| COG1640: 4-alpha-glucanotransferase [Shigella dysenteriae 1012], gi\|1...	854.0	[0..1]	[684..1]
gi\|157156003, gi... - gi\|75188190\|ref\|ZP_00701457.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli E24377A], gi\|15... gi\|218555965, gi... - gi\|218555965\|ref\|YP_002388878.1\| 4-alpha-glucanotransferase [Escherichia coli IAI1], gi\|218362733\|em... gi\|192957926, gi... - gi\|75237018\|ref\|ZP_00721074.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli E110019], gi\|19...	854.0	[0..1]	[684..1]
gi\|193061663, gi... - gi\|75260295\|ref\|ZP_00731563.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli E22], gi\|193061... gi\|194414941, gi... - gi\|75211783\|ref\|ZP_00711847.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli B171], gi\|19442...	853.0	[0..1]	[684..1]
gi\|77978689, gi\|... - gi\|77978689\|ref\|ZP_00834115.1\| COG1640: 4-alpha-glucanotransferase [Yersinia intermedia ATCC 29909],...	853.0	[0..1]	[688..1]
gi\|209920874, gi... - gi\|209920874\|ref\|YP_002294958.1\| 4-alpha-glucanotransferase [Escherichia coli SE11], gi\|209914133\|db... gi\|75229574, gi\|... - gi\|75229574\|ref\|ZP_00716117.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli B7A], gi\|752289...	853.0	[0..1]	[684..1]
gi\|124500844, gi... - gi\|124528189\|ref\|ZP_01699522.1\| 4-alpha-glucanotransferase [Escherichia coli B], gi\|124500844\|gb\|EAY... gi\|75516116, gi\|... - gi\|75516116\|ref\|ZP_00738234.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli 53638], gi\|1884... gi\|75197347, gi\|... - gi\|75197347\|ref\|ZP_00707417.1\| COG1640: 4-alpha-glucanotransferase [Escherichia coli HS], gi\|1571628... gi\|170018348, gi... - gi\|170018348\|ref\|YP_001723302.1\| 4-alpha-glucanotransferase [Escherichia coli ATCC 8739], gi\|1697532...	852.0	[0..1]	[684..1]
gi\|218367243, gi... - gi\|218560474\|ref\|YP_002393387.1\| 4-alpha-glucanotransferase [Escherichia coli S88], gi\|218367243\|emb... gi\|91212891, gi\|... - gi\|91212891\|ref\|YP_542877.1\| 4-alpha-glucanotransferase [Escherichia coli UTI89], gi\|91074465\|gb\|ABE... gi\|237703147, gi... - gi\|237703147\|ref\|ZP_04533628.1\| 4-alpha-glucanotransferase MalQ [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|117625681, gi... - gi\|117625681\|ref\|YP_859004.1\| 4-alpha-glucanotransferase [Escherichia coli APEC O1], gi\|115514805\|gb...	852.0	[0..1]	[684..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKRLDNAA LAAGISPNYI NAHGKPQSIS AETKRRLLDA MHQRTATKVA VTPVPNVMVY  60
   61 TSGKKMPMVV EGSGEYSWLL TTEEGTQYKG HVTGGKAFNL PTKLPEGYHT LTLTQDDQRA 120
  121 HCRVIVAPKR CYEPQAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-694]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNKQKLWGAC VQLYTLRSEK NWGIGDFGDL KAMLVDVAKR GGSFIGLNPI HALYPANPES  60
   61 ASPYSPSSRR WLNVIYIDVN AVEDFHLSEE AQAWWQLPTT QQTLQQARDA DWVDYSTVTA 120
  121 LKMTALRMAW KGFAQRDDEQ MAAFRQFVAE QGDSLFWQAA FDALHAQQVK EDEMRWGWPA 180
  181 WPEMYQNVDS PEVRQFCEEH RDDVDFYLWL QWLAYSQFAA CWEISQGYEM PIGLYRDLAV 240
  241 GVAEGGAETW CDRELYCLKA SVGAPPDILG PLGQNWGLPP MDPHIITARA YEPFIELLRA 300
  301 NMQNCGALRI DHVMSMLRLW WIPYGETADQ GAYVHYPVDD LLSILALESK RHRCMVIGED 360
  361 LGTVPVEIVG KLRSSGVYSY KVLYFENDHE KTFRAPKAYP EQSMAVAATH DLPTLRGYWE 420
  421 CGDLTLGKTL GLYPDEVVLR GLYQDRELAK QGLLDALHKY GCLPKRAGHK ASLMSMTPTL 480
  481 NRGLQRYIAD SNSALLGLQP EDWLDMAEPV NIPGTSYQYK NWRRKLSATL ESMFADDGVN 540
  541 KLLKDLDRRR RAAAKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	147.0
Match:	2owcA
Description:	No description for 2owcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits