YRC Public Data Repository - Protein Structure Prediction

Protein:	MALM_ECOLI
Organism:	Escherichia coli
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MALM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26111250, gi\|... - gi\|26250819\|ref\|NP_756859.1\| maltose regulon periplasmic protein [Escherichia coli CFT073], gi\|26111... gi\|115515430, gi... - gi\|117626306\|ref\|YP_859629.1\| maltose regulon periplasmic protein [Escherichia coli APEC O1], gi\|115...	382.0	[0..1]	[306..4]
gi\|75241068, gi\|... - gi\|75241068\|ref\|ZP_00724942.1\| hypothetical protein EcolF_01001890 [Escherichia coli F11], gi\|191172... gi\|218367877, gi... - gi\|218561108\|ref\|YP_002394021.1\| maltose regulon periplasmic protein [Escherichia coli S88], gi\|2183... gi\|218692323, gi... - gi\|218692323\|ref\|YP_002400535.1\| maltose regulon periplasmic protein [Escherichia coli ED1a], gi\|218... gi\|110644376, gi... - gi\|110644376\|ref\|YP_672106.1\| maltose regulon periplasmic protein [Escherichia coli 536], gi\|1103459... gi\|227836098, gi... - gi\|227886957\|ref\|ZP_04004762.1\| maltose regulon periplasmic protein [Escherichia coli 83972], gi\|227...	382.0	[0..1]	[306..1]
gi\|208808010, gi... - gi\|208808010\|ref\|ZP_03250347.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4206], ... gi\|208735800, gi... - gi\|208814523\|ref\|ZP_03255852.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4045], ... gi\|208820524, gi... - gi\|208820524\|ref\|ZP_03260844.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4042], ... gi\|209396312, gi... - gi\|209396312\|ref\|YP_002273558.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4115],... gi\|168780431, gi... - gi\|189001769\|gb\|EDU70755.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|189374817, gi... - gi\|189374817\|gb\|EDU93233.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|168798319, gi... - gi\|189379160\|gb\|EDU97576.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|195935804 - gi\|195935804\|ref\|ZP_03081186.1\| maltose regulon periplasmic protein [Escherichia coli O157:H7 str. E... gi\|168755189, gi... - gi\|189357381\|gb\|EDU75800.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|168760884, gi... - gi\|189368640\|gb\|EDU87056.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|189364223, gi... - gi\|189364223\|gb\|EDU82642.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|187769876, gi... - gi\|187769876\|gb\|EDU33720.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|188015035, gi... - gi\|188015035\|gb\|EDU53157.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|254595439, gi... - gi\|254796039\|ref\|YP_003080876.1\| maltose regulon periplasmic protein [Escherichia coli O157:H7 str. ... gi\|13364497, gi\|... - gi\|15834274\|ref\|NP_313047.1\| maltose regulon periplasmic protein [Escherichia coli O157:H7 str. Saka... gi\|217324570, gi... - gi\|217324570\|ref\|ZP_03440654.1\| maltose operon protein MalM [Escherichia coli O157:H7 str. TW14588],... gi\|209751386, gi... - pir\|\|D91256 periplasmic protein of mal regulon [imported] - Escherichia coli (strain O157:H7, substr... gi\|13364497, gi\|... - gi\|15834274\|ref\|NP_313047.1\| periplasmic protein of mal regulon [Escherichia coli O157:H7], gi\|13364...	381.0	[0..1]	[306..1]
gi\|218697744, gi... - gi\|218697744\|ref\|YP_002405411.1\| maltose regulon periplasmic protein [Escherichia coli 55989], gi\|21... gi\|218372688, gi... - gi\|218702702\|ref\|YP_002410331.1\| maltose regulon periplasmic protein [Escherichia coli IAI39], gi\|21... gi\|209921519, gi... - gi\|209921519\|ref\|YP_002295603.1\| maltose regulon periplasmic protein [Escherichia coli SE11], gi\|209... gi\|124527678, gi... - gi\|124527678\|ref\|ZP_01699113.1\| Maltose operon periplasmic [Escherichia coli B], gi\|124501121\|gb\|EAY... gi\|218556593, gi... - gi\|218556593\|ref\|YP_002389507.1\| maltose regulon periplasmic protein [Escherichia coli IAI1], gi\|218... gi\|218434756, gi... - gi\|218707659\|ref\|YP_002415178.1\| maltose regulon periplasmic protein [Escherichia coli UMN026], gi\|2... gi\|75514798, gi\|... - gi\|75514798\|ref\|ZP_00737027.1\| hypothetical protein Ecol5_01001209 [Escherichia coli 53638], gi\|1884... gi\|191167465, gi... - gi\|75229395\|ref\|ZP_00715947.1\| hypothetical protein EcolB7_01002350 [Escherichia coli B7A], gi\|19116... gi\|157163506, gi... - gi\|75197898\|ref\|ZP_00707968.1\| hypothetical protein EcolH_01003738 [Escherichia coli HS], gi\|1571635... gi\|157079160, gi... - gi\|75188764\|ref\|ZP_00702031.1\| hypothetical protein EcolE_01002038 [Escherichia coli E24377A], gi\|15... gi\|170021964, gi... - gi\|170021964\|ref\|YP_001726918.1\| maltose regulon periplasmic protein [Escherichia coli ATCC 8739], g...	381.0	[0..1]	[306..1]
gi\|73858007, gi\|... - gi\|74314530\|ref\|YP_312949.1\| maltose regulon periplasmic protein [Shigella sonnei Ss046], gi\|7385800...	381.0	[0..1]	[306..1]
gi\|75258958, gi\|... - gi\|75258958\|ref\|ZP_00730326.1\| hypothetical protein EcolE2_01001221 [Escherichia coli E22], gi\|19306... gi\|75211921, gi\|... - gi\|75211921\|ref\|ZP_00711976.1\| hypothetical protein EcolB_01000920 [Escherichia coli B171], gi\|19442...	381.0	[0..1]	[306..1]
gi\|25297670 - pir\|\|H86096 periplasmic protein of mal regulon [imported] - Escherichia coli (strain O157:H7, substr... gi\|12518983, gi\|... - gi\|15804630\|ref\|NP_290671.1\| maltose regulon periplasmic protein [Escherichia coli O157:H7 EDL933], ...	381.0	[0..1]	[306..1]
gi\|91075134, gi\|... - gi\|91213560\|ref\|YP_543546.1\| maltose regulon periplasmic protein [Escherichia coli UTI89], gi\|910751...	380.0	[0..1]	[306..4]
gi\|194423817, gi... - gi\|83587131\|ref\|ZP_00925760.1\| hypothetical protein Ecol1_01001518 [Escherichia coli 101-1], gi\|1944...	379.0	[0..1]	[306..1]
gi\|75238576, gi\|... - gi\|75238576\|ref\|ZP_00722565.1\| hypothetical protein EcolE1_01000890 [Escherichia coli E110019], gi\|1...	379.0	[0..1]	[306..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMNKSLIVL CLSAGLLASA PGISLADVNY VPQNTSDAPA IPSAALQQLT WTPVDQSKTQ  60
   61 TTQLATGGQQ LNVPGISGPV AAYSVPANIG ELTLTLTSEV NKQTSVFAPN VLILDQNMTP 120
  121 SAFFPSSYFT YQEPGVMSAD RLEGVMRLTP ALGQQKLYVL VFTTEKDLQQ TTQLLDPAKA 180
  181 YAKGVGNSIP DIPDPVARHT TDGLLKLKVK TNSSSSVLVG PL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [223-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGSSAPAPVT VGNTAAPAVA APAPAPVKKS EPMLNDTESY FNTAIKNAVA KGDVDKALKL  60
   61 LDEAERLGST SARSTFISSV KGKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits