YRC Public Data Repository - Protein Structure Prediction

Protein:	LYSQ_ECOLI, LYCW...
Organism:	Escherichia coli
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYSQ_ECOLI, LYCW....

Description	E-value	Query Range	Subject Range
gi\|115513259, gi... - gi\|117624135\|ref\|YP_853048.1\| putative phage lysozyme [Escherichia coli APEC O1], gi\|115513259\|gb\|AB...	217.0	[0..1]	[177..1]
gi\|254161439, gi... - gi\|254161439\|ref\|YP_003044547.1\| predicted lysozyme [Escherichia coli B str. REL606], gi\|253973340\|g... gi\|253324684, gi... - gi\|254288245\|ref\|YP_003053993.1\| predicted lysozyme [Escherichia coli BL21(DE3)], gi\|253977552\|gb\|AC... gi\|242377135, gi... - gi\|251784862\|ref\|YP_002999166.1\| hypothetical protein B21_01346 [Escherichia coli BL21], gi\|24237713... gi\|26107706, gi\|... - gi\|26247305\|ref\|NP_753345.1\| lysozyme from lambdoid prophage Qin [Escherichia coli CFT073], gi\|26107...	217.0	[0..1]	[177..1]
gi\|91210513, gi\|... - gi\|91210513\|ref\|YP_540499.1\| putative phage lysozyme [Escherichia coli UTI89], gi\|91072087\|gb\|ABE069... gi\|237705253, gi... - gi\|237705253\|ref\|ZP_04535734.1\| lysozyme protein R [Escherichia sp. 3_2_53FAA], gi\|226900010\|gb\|EEH8...	215.0	[0..1]	[177..1]
gi\|194411913, gi... - gi\|75208719\|ref\|ZP_00709013.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli B171...	215.0	[0..1]	[177..1]
gi\|193066607, gi... - gi\|75255260\|ref\|ZP_00727103.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli E22]...	215.0	[0..1]	[177..1]
gi\|187428216, gi... - gi\|75179125\|ref\|ZP_00699143.1\| COG3772: Phage-related lysozyme (muraminidase) [Shigella boydii BS512... gi\|218351530, gi... - gi\|218694798\|ref\|YP_002402465.1\| putative membrane-associated lysozyme; Qin prophage [Escherichia co...	215.0	[0..1]	[177..1]
gi\|24050941, gi\|... - ref\|NP_706619.1\| endolysin [Shigella flexneri 2a str. 301], gb\|AAN42326.1\| endolysin [Shigella flex... gi\|30040475, gi\|... - gi\|30062230\|ref\|NP_836401.1\| putative endolysin R of prophage CP-933V [Shigella flexneri 2a str. 245... gi\|75514157, gi\|... - gi\|75514157\|ref\|ZP_00736487.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli 5363...	214.0	[0..1]	[177..1]
LYS_BPH19 - Lysozyme OS=Enterobacteria phage H19B GN=R PE=3 SV=1	213.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTKIRYGLS AAVLALIGAG ASAPQILDQF LDEKEGNHTM AYRDGSGIWT ICRGATVVDG  60
   61 KTVFPNMKLS KEKCDQVNAI ERDKALAWVE RNIKVPLTEP QKAGIASFCP YNIGPGKCFP 120
  121 STFYKRLNAG DRKGACEAIR WWIKDGGRDC RIRSNNCYGQ VIRRDQESAL TCWGIEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	2anvA
Description:	crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits