YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: LYSQ_ECOLI, LYCW...
Organism: Escherichia coli
Length: 177 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYSQ_ECOLI, LYCW....

Description E-value Query
Range
Subject
Range
gi|115513259, gi... - gi|117624135|ref|YP_853048.1| putative phage lysozyme [Escherichia coli APEC O1], gi|115513259|gb|AB...
217.0 [0..1] [177..1]
gi|254161439, gi... - gi|254161439|ref|YP_003044547.1| predicted lysozyme [Escherichia coli B str. REL606], gi|253973340|g...
gi|253324684, gi... - gi|254288245|ref|YP_003053993.1| predicted lysozyme [Escherichia coli BL21(DE3)], gi|253977552|gb|AC...
gi|242377135, gi... - gi|251784862|ref|YP_002999166.1| hypothetical protein B21_01346 [Escherichia coli BL21], gi|24237713...
gi|26107706, gi|... - gi|26247305|ref|NP_753345.1| lysozyme from lambdoid prophage Qin [Escherichia coli CFT073], gi|26107...
217.0 [0..1] [177..1]
gi|91210513, gi|... - gi|91210513|ref|YP_540499.1| putative phage lysozyme [Escherichia coli UTI89], gi|91072087|gb|ABE069...
gi|237705253, gi... - gi|237705253|ref|ZP_04535734.1| lysozyme protein R [Escherichia sp. 3_2_53FAA], gi|226900010|gb|EEH8...
215.0 [0..1] [177..1]
gi|194411913, gi... - gi|75208719|ref|ZP_00709013.1| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli B171...
215.0 [0..1] [177..1]
gi|193066607, gi... - gi|75255260|ref|ZP_00727103.1| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli E22]...
215.0 [0..1] [177..1]
gi|187428216, gi... - gi|75179125|ref|ZP_00699143.1| COG3772: Phage-related lysozyme (muraminidase) [Shigella boydii BS512...
gi|218351530, gi... - gi|218694798|ref|YP_002402465.1| putative membrane-associated lysozyme; Qin prophage [Escherichia co...
215.0 [0..1] [177..1]
gi|24050941, gi|... - ref|NP_706619.1| endolysin [Shigella flexneri 2a str. 301], gb|AAN42326.1| endolysin [Shigella flex...
gi|30040475, gi|... - gi|30062230|ref|NP_836401.1| putative endolysin R of prophage CP-933V [Shigella flexneri 2a str. 245...
gi|75514157, gi|... - gi|75514157|ref|ZP_00736487.1| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli 5363...
214.0 [0..1] [177..1]
LYS_BPH19 - Lysozyme OS=Enterobacteria phage H19B GN=R PE=3 SV=1
213.0 [0..1] [177..1]

Back

Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTKIRYGLS AAVLALIGAG ASAPQILDQF LDEKEGNHTM AYRDGSGIWT ICRGATVVDG  60
   61 KTVFPNMKLS KEKCDQVNAI ERDKALAWVE RNIKVPLTEP QKAGIASFCP YNIGPGKCFP 120
  121 STFYKRLNAG DRKGACEAIR WWIKDGGRDC RIRSNNCYGQ VIRRDQESAL TCWGIEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 2anvA
Description: crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle