YRC Public Data Repository - Protein Structure Prediction

Protein:	LIVJ_ECOLI
Organism:	Escherichia coli
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIVJ_ECOLI.

Description	E-value	Query Range	Subject Range
BRAC_PSEAE - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein OS=Pseudomonas aeruginosa GN... BRAC_PSEAE - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein OS=Pseudomonas aeruginosa (s... gi\|107100519 - gi\|107100519\|ref\|ZP_01364437.1\| hypothetical protein PaerPA_01001544 [Pseudomonas aeruginosa PACS2] gi\|218773191, gi... - gi\|218892963\|ref\|YP_002441832.1\| branched-chain amino acid transport protein BraC [Pseudomonas aerug... gi\|194550417, gi... - gi\|84328536\|ref\|ZP_00976540.1\| COG0683: ABC-type branched-chain amino acid transport systems, peripl... gi\|126166141, gi... - gi\|84322066\|ref\|ZP_00970411.1\| COG0683: ABC-type branched-chain amino acid transport systems, peripl...	288.0	[0..2]	[367..6]
gi\|151110 - gi\|151110\|gb\|AAA88430.1\| leucine-, isoleucine-, and valine-binding protein [Pseudomonas aeruginosa]	287.0	[0..2]	[367..6]
gi\|53727484, gi\|... - gi\|53727484\|ref\|ZP_00138660.2\| COG0683: ABC-type branched-chain amino acid transport systems, peripl...	286.0	[0..2]	[367..6]
gi\|63257779, gi\|... - gi\|66047072\|ref\|YP_236913.1\| extracellular ligand-binding receptor [Pseudomonas syringae pv. syringa...	283.0	[0..2]	[364..6]
gi\|83644114, gi\|... - gi\|83644114\|ref\|YP_432549.1\| ABC-type branched-chain amino acid transport system, periplasmic compon...	283.0	[0..1]	[367..1]
tr\|I7C7N1\|I7C7N1... - Extracellular ligand-binding receptor OS=Pseudomonas putida (strain DOT-T1E) GN=braC PE=4 SV=1 gi\|82737502, gi\|... - gi\|82737502\|ref\|ZP_00900351.1\| branched-chain amino acid ABC transporter, periplasmic amino acid-bin...	281.0	[0..1]	[366..1]
gi\|146297472, gi... - gi\|82499532\|ref\|ZP_00884975.1\| ABC transporter (substrate-binding protein) [Caldicellulosiruptor sac...	280.0	[0..2]	[362..10]
gi\|71734131, gi\|... - gi\|71734131\|ref\|YP_273673.1\| high-affinity branched-chain amino acid ABC transporter, periplasmic am...	280.0	[0..2]	[364..29]
gi\|94415932 - gi\|94415932\|ref\|ZP_01295764.1\| hypothetical protein PaerP_01002261 [Pseudomonas aeruginosa PA7]	280.0	[0..11]	[367..1]
tr\|E4R7N5\|E4R7N5... - BraC OS=Pseudomonas putida (strain BIRD-1) GN=braC PE=4 SV=1 gi\|24982582, gi\|... - gi\|26987877\|ref\|NP_743302.1\| extracellular ligand-binding receptor [Pseudomonas putida KT2440], gi\|2...	280.0	[0..1]	[366..1]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKGKALLA GCIALAFSNM ALAEDIKVAV VGAMSGPVAQ YGDQEFTGAE QAVADINAKG  60
   61 GIKGNKLQIV KYDDACDPKQ AVAVANKVVN DGIKYVIGHL CSSSTQPASD IYEDEGILMI 120
  121 TPAATAPELT ARGYQLILRT TGLDSDQGPT AAKYILEKVK PQRIAIVHDK QQYGEGLARA 180
  181 VQDGLKKGNA NVVFFDGITA GEKDFSTLVA RLKKENIDFV YYGGYHPEMG QILRQARAAG 240
  241 LKTQFMGPEG VANVSLSNIA GESAEGLLVT KPKNYDQVPA NKPIVDAIKA KKQDPSGAFV 300
  301 WTTYAALQSL QAGLNQSDDP AEIAKYLKAN SVDTVMGPLT WDEKGDLKGF EFGVFDWHAN 360
  361 GTATDAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	1z15A
Description:	Crystal structure analysis of periplasmic Leu/Ile/Val-binding protein in superopen form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits