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View Structure Prediction Details

Protein: LIPB_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIPB_PHOLL.

Description E-value Query
Range
Subject
Range
LIPB_PHOLL - Octanoyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=lipB PE=3 SV=2
LIPB_PHOLL - Octanoyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT...
317.0 [0..9] [221..1]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSYSYQMK FQLQHKTIFL RQLGIQPYEP ISDAMHLFTE QRDTNTPDEI WLVQHPKVFT  60
   61 QGQAGKAEHL LSLGDIPVIQ SDRGGQVTYH GPGQQVMYVM IDIKRARIGV RQLVTAIEDT 120
  121 VIKTLAHFGV KAYARPDAPG VYVNEAKICS LGLRIRKGCS FHGLALNIAM DLEPFQRINP 180
  181 CGYAGMKMIQ LSDLVPGITV EQVQPVLVEK FCQQLGFKLN S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.09691
Match: 1w66A
Description: Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-oxygen bonds 3.33073922220594 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 3.33073922220594 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 3.33034630936933 bayes_pls_golite062009
ligase activity 3.05852492533937 bayes_pls_golite062009
catalytic activity 2.36416267096403 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle