YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_COXBU
Organism:	Coxiella burnetii
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_COXBU.

Description	E-value	Query Range	Subject Range
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	308.0	[0..1]	[259..158]
gi\|254237423, gi... - gi\|84318476\|ref\|ZP_00966899.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Pseudomonas aerugi...	304.0	[0..1]	[258..1]
LGT_PSEAE - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|126196818, gi... - gi\|84324425\|ref\|ZP_00972483.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Pseudomonas aerugi... gi\|107099325 - gi\|107099325\|ref\|ZP_01363243.1\| hypothetical protein PaerPA_01000337 [Pseudomonas aeruginosa PACS2] LGT_PSEA8 - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain LESB58) GN=lgt PE=3 SV=1 LGT_PSEAE - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa GN=lgt PE=3 SV=1	304.0	[0..1]	[258..1]
gi\|49089376 - gi\|49089376\|gb\|AAT51676.1\| PA0341 [synthetic construct]	304.0	[0..1]	[258..1]
LGT_PSEAB - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lgt PE=3 ...	304.0	[0..1]	[258..1]
LGT_PSEA7 - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain PA7) GN=lgt PE=3 SV=1	304.0	[0..1]	[258..1]
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	302.0	[0..2]	[259..6]
LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) ... LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea GN=lgt PE=3 SV=1	301.0	[0..1]	[257..1]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	300.0	[0..2]	[259..6]
gi\|84375415, gi\|... - gi\|84393971\|ref\|ZP_00992711.1\| prolipoprotein diacylglyceryl transferase [Vibrio splendidus 12B01], ... gi\|86147415, gi\|... - gi\|86147415\|ref\|ZP_01065728.1\| prolipoprotein diacylglyceryl transferase [Vibrio sp. MED222], gi\|858...	300.0	[0..2]	[259..6]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYYPHIDPV AFRLGPLKVH WYGLMYLVGF AMAWGLALYR ARDPKRHWTA QQVGDLIFYG  60
   61 ALGLIIGGRL GYMLFYDFSN FIANPLTLFQ VWRGGMSFHG GLIGVIVTTW IFSRRTHKRW 120
  121 MDVTDFVVPL VPLGLAAGRI GNFINGELWG RVTTVPWGMV FPNA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLPRHPSQL YEFLLEGVLL FIVIWWFSAK LRPRFAVSSL FLLCYGLFRF TAEFFRQPDP  60
   61 QLGFVAFGWL TRGQELSLPM IIIGGFALWW AYRHKER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits