YRC Public Data Repository - Protein Structure Prediction

Protein:	LEP4_ECOLI
Organism:	Escherichia coli
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEP4_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|109701928, gi... - gi\|76795128\|ref\|ZP_00777565.1\| Prepilin peptidase [Pseudoalteromonas atlantica T6c], gi\|76589596\|gb\|...	229.0	[0..10]	[224..73]
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	225.0	[0..8]	[223..78]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	224.0	[0..3]	[223..71]
gi\|53759202, gi\|... - gi\|91776577\|ref\|YP_546333.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Me...	222.0	[0..10]	[224..65]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	222.0	[0..8]	[223..78]
gi\|110833473, gi... - gi\|110833473\|ref\|YP_692332.1\| leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis SK2],...	221.0	[0..9]	[223..64]
gi\|71735543, gi\|... - gi\|71735543\|ref\|YP_273100.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseol...	221.0	[0..8]	[224..61]
tr\|Q888U2\|Q888U2... - Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Pseudomonas syringae pv. tomato (s... gi\|28868144, gi\|... - gi\|28868144\|ref\|NP_790763.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato ...	221.0	[0..8]	[224..61]
gi\|76874257, gi\|... - gi\|77359346\|ref\|YP_338921.1\| leader peptide processing enzyme [Pseudoalteromonas haloplanktis TAC125...	220.0	[0..8]	[223..63]
gi\|66044051, gi\|... - gi\|66044051\|ref\|YP_233892.1\| prepilin peptidase [Pseudomonas syringae pv. syringae B728a], gi\|632547...	219.0	[0..8]	[224..61]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMLLPLFIL VGFIADYFVN AIAYHLSPLE DKTALTFRQV LVHFRQKKYA WHDTVPLILC  60
   61 VAAAIACALA PFTPIVTGAL FLYFCFVLTL SVIDFRTQLL PDKLTLPLLW LGLVFNAQYG 120
  121 LIDLHDAVYG AVAGYGVLWC VYWGVWLVCH KEGLGYGDFK LLAAAGAWCG WQTLPMILLI 180
  181 ASLGGIGYAI VSQLLQRRTI TTIAFGPWLA LGSMINLGYL AWISY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.387216
Match:	PF01478.9
Description:	No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits