YRC Public Data Repository - Protein Structure Prediction

Protein:	LCFA_ECOLI
Organism:	Escherichia coli
Length:	561 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15831768, gi\|... - gi\|15831768\|ref\|NP_310541.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. Sakai]... gi\|188024849, gi... - gi\|188024849\|ref\|ZP_02774387.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|187776032, gi... - gi\|187776032\|ref\|ZP_02799887.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... LCFA_ECO57 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1 gi\|254793427, gi... - gi\|254793427\|ref\|YP_003078264.1\| acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase [Escherichia... gi\|15802218, gi\|... - gi\|15802218\|ref\|NP_288241.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 EDL933], gi... gi\|25293428, gi\|... - pir\|\|F85791 long-chain-fatty-acid-CoA ligase [imported] - Escherichia coli (strain O157:H7, substrai... gi\|189406059, gi... - gi\|189406059\|ref\|ZP_02826039.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC5... gi\|189405101, gi... - gi\|189405101\|ref\|ZP_02813224.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC8... gi\|189360342, gi... - gi\|189403489\|ref\|ZP_02795784.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|189402537, gi... - gi\|189402537\|ref\|ZP_02783121.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|209397101, gi... - gi\|209397101\|ref\|YP_002270882.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC... gi\|208821900, gi... - gi\|208821900\|ref\|ZP_03262220.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208731034, gi... - gi\|208816691\|ref\|ZP_03257811.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208810251, gi... - gi\|208810251\|ref\|ZP_03252127.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4...	608.0	[0..1]	[561..1]
gi\|81245203, gi\|... - gi\|82543792\|ref\|YP_407739.1\| long-chain-fatty-acid--CoA ligase [Shigella boydii Sb227], gi\|81245203\|...	606.0	[0..1]	[561..1]
gi\|110641922, gi... - gi\|110641922\|ref\|YP_669652.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 536], gi\|110343514... gi\|75513698 - gi\|75513698\|ref\|ZP_00736074.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75255568 - gi\|75255568\|ref\|ZP_00727355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75241326 - gi\|75241326\|ref\|ZP_00725177.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75227933 - gi\|75227933\|ref\|ZP_00714633.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75215166 - gi\|75215166\|ref\|ZP_00713611.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75208737 - gi\|75208737\|ref\|ZP_00709029.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|124531917, gi... - gi\|124531917\|ref\|ZP_01702000.1\| AMP-dependent synthetase and ligase [Escherichia coli B], gi\|1244982... gi\|75195871 - gi\|75195871\|ref\|ZP_00705941.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... tr\|A0A109ZPL0\|A0... - Long-chain fatty acid--CoA ligase OS=Escherichia coli (strain K12) GN=C3026_10285 PE=4 SV=1 gi\|75190835 - gi\|75190835\|ref\|ZP_00704102.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|83584990 - gi\|83584990\|ref\|ZP_00923645.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch...	605.0	[0..3]	[561..14]
gi\|91072594, gi\|... - gi\|91211020\|ref\|YP_541006.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli UTI89], gi\|91072594... gi\|115513089, gi... - gi\|117623965\|ref\|YP_852878.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli APEC O1], gi\|11551...	605.0	[0..3]	[561..25]
gi\|24112807, gi\|... - gi\|24112807\|ref\|NP_707317.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 301], gi\|2... gi\|30062941, gi\|... - gi\|30062941\|ref\|NP_837112.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 2457T], gi...	605.0	[0..3]	[561..25]
gi\|26248063, gi\|... - gi\|26248063\|ref\|NP_754103.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli CFT073], gi\|2610846...	605.0	[0..3]	[561..25]
gi\|75177266 - gi\|75177266\|ref\|ZP_00697355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Shig...	605.0	[0..3]	[561..14]
gi\|73855360, gi\|... - gi\|74311883\|ref\|YP_310302.1\| long-chain-fatty-acid--CoA ligase [Shigella sonnei Ss046], gi\|73855360\|...	605.0	[0..1]	[561..1]
LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1 gi\|161363037, gi... - gi\|161613673\|ref\|YP_001587638.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... LCFA_SALTI - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1 LCFA_SALTI - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1 gi\|16760708 - gi\|16760708\|ref\|NP_456325.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica ... gi\|197938682, gi... - gi\|198244166\|ref\|YP_002215322.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1 gi\|197261708, gi... - gi\|197261708\|ref\|ZP_03161782.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... LCFA_SALTY - Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN... gi\|194735459, gi... - gi\|194735459\|ref\|YP_002114852.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|29141534, gi\|... - gi\|29141534\|ref\|NP_804876.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica ... gi\|194456682, gi... - gi\|194470318\|ref\|ZP_03076302.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|207856675, gi... - gi\|207856675\|ref\|YP_002243326.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=fadD] [protein=long-chain-fatty-acid--CoA ligase] [protein_id=YP_005237758.1] [location=comple... gi\|205350740, gi... - gi\|205360226\|ref\|ZP_02681918.2\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|199602823, gi... - gi\|200390378\|ref\|ZP_03216989.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enteri... gi\|168237883, gi... - gi\|197289230\|gb\|EDY28597.1\| long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoAsynthetase) [Salmo... gi\|168234289, gi... - gi\|205331771\|gb\|EDZ18535.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|205328677, gi... - gi\|205328677\|gb\|EDZ15441.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|167553502, gi... - gi\|205322085\|gb\|EDZ09924.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|194447353, gi... - gi\|194447353\|ref\|YP_002045864.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|194444947, gi... - gi\|194444947\|ref\|YP_002041075.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|205342578, gi... - gi\|205342578\|gb\|EDZ29342.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s... gi\|168241410, gi... - gi\|205339101\|gb\|EDZ25865.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica s...	605.0	[0..1]	[561..1]
gi\|110614950, gi... - gi\|110805402\|ref\|YP_688922.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 5 str. 8401], gi\|...	604.0	[0..3]	[561..14]

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Predicted Domain #1

Region A:
Residues: [1-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVWLNRYP ADVPTEINPD RYQSLVDMFE QSVARYADQP AFVNMGEVMT FRKLEERSRA  60
   61 FAAYLQQGLG LKKGDRVALM MPNLLQYPVA LFGILRAGMI VVNVNPLYTP RELEHQLNDS 120
  121 GASAIVIVSN FAHTLEKVVD KTAVQHVILT RMGDQLSTAK GTVVNFVVKY IKRLVPKYHL 180
  181 PDAISFRSAL HNGYRMQYVK PELVPEDLAF LQYTGGTTGV AKGAMLTHRN MLANLEQVNA 240
  241 TYGPLLHPGK ELVVTALPLY HIFALTINCL LFIELGGQNL LITNPRDIPG LVKELAKYPF 300
  301 TAITGVNTLF NALLNNKEFQ QLDFSSLHLS AGGGMPVQQV VAERWVKLTG QYLLEGYGLT 360
  361 ECAPLVSVNP YDIDYHSGSI GLPVPSTEAK LVDDDDNEVP PGQPGELCVK GPQVMLGYWQ 420
  421 RPDATDEIIK NGWLHTGDIA VMDEEGFLRI VDRKKDMILV SGFNVYPNEI EDVVMQHPGV 480
  481 QEVAAVGVPS GSSGEAVKIF VVKKDPSLTE ESLVTFCRRQ LTGYKVPKLV EFRDELPKSN 540
  541 VGKILRRELR DEARGKVDNK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	145.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits