YRC Public Data Repository - Protein Structure Prediction

Protein:	KPPR_ECOLI
Organism:	Escherichia coli
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPPR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238792912, gi... - gi\|77978198\|ref\|ZP_00833630.1\| COG3954: Phosphoribulokinase [Yersinia intermedia ATCC 29909], gi\|238...	259.0	[0..1]	[288..1]
gi\|22127829, gi\|... - gi\|22127829\|ref\|NP_671252.1\| phosphoribulokinase 1 [Yersinia pestis KIM], gi\|21960962\|gb\|AAM87503.1\|... gi\|45434893, gi\|... - gi\|45440038\|ref\|NP_991577.1\| phosphoribulokinase 1 [Yersinia pestis biovar Microtus str. 91001], gi\|...	257.0	[0..1]	[288..13]
gi\|238718899, gi... - gi\|77962712\|ref\|ZP_00826529.1\| COG3954: Phosphoribulokinase [Yersinia mollaretii ATCC 43969], gi\|238...	256.0	[0..1]	[288..1]
gi\|238722962, gi... - gi\|77975016\|ref\|ZP_00830553.1\| COG3954: Phosphoribulokinase [Yersinia frederiksenii ATCC 33641], gi\|...	256.0	[0..1]	[288..1]
Q664P3\|Q664P3_YERPS - Phosphoribulokinase 1 precursor - Yersinia pseudotuberculosis gi\|89103000, gi\|... - gi\|89103000\|ref\|ZP_01175598.1\| COG3954: Phosphoribulokinase [Yersinia pestis biovar Orientalis str. ... gi\|108781198, gi... - gi\|108809285\|ref\|YP_653201.1\| phosphoribulokinase 1 [Yersinia pestis Antiqua], gi\|108781198\|gb\|ABG15... gi\|229706409, gi... - gi\|229836341\|ref\|ZP_04456508.1\| predicted phosphoribulokinase [Yersinia pestis Pestoides A], gi\|2297... gi\|229696401, gi... - gi\|229840035\|ref\|ZP_04460194.1\| predicted phosphoribulokinase [Yersinia pestis biovar Orientalis str... gi\|169749049, gi... - gi\|170022515\|ref\|YP_001719020.1\| phosphoribulokinase [Yersinia pseudotuberculosis YPIII], gi\|1697490... gi\|229842117, gi... - gi\|229842117\|ref\|ZP_04462272.1\| predicted phosphoribulokinase [Yersinia pestis biovar Orientalis str... gi\|167468840 - gi\|167468840\|ref\|ZP_02333544.1\| putative phosphoribulokinase [Yersinia pestis FV-1] gi\|186897212, gi... - gi\|186897212\|ref\|YP_001874324.1\| phosphoribulokinase/uridine kinase [Yersinia pseudotuberculosis PB1... gi\|229904583, gi... - gi\|229904583\|ref\|ZP_04519694.1\| predicted phosphoribulokinase [Yersinia pestis Nepal516], gi\|2296787... gi\|150260771, gi... - gi\|150260771\|ref\|ZP_01917499.1\| phosphoribulokinase 1 [Yersinia pestis CA88-4125], gi\|149290179\|gb\|E... gi\|145597424, gi... - gi\|145597424\|ref\|YP_001161499.1\| phosphoribulokinase 1 [Yersinia pestis Pestoides F], gi\|145209120\|g... gi\|25287544 - pir\|\|AF0022 phosphoribulokinase (EC 2.7.1.19) [imported] - Yersinia pestis (strain CO92) gi\|16120519, gi\|... - gi\|218927387\|ref\|YP_002345262.1\| phosphoribulokinase 1 [Yersinia pestis CO92], gi\|16120519\|ref\|NP_40... gi\|77634617, gi\|... - gi\|77634617\|ref\|ZP_00796714.1\| COG3954: Phosphoribulokinase [Yersinia pestis Angola], gi\|162420970\|r... gi\|166010437, gi... - gi\|166010437\|ref\|ZP_02231335.1\| putative phosphoribulokinase [Yersinia pestis biovar Antiqua str. E1... gi\|51598016, gi\|... - gi\|51598016\|ref\|YP_072207.1\| phosphoribulokinase 1 [Yersinia pseudotuberculosis IP 32953], gi\|515912... gi\|117675354, gi... - gi\|77631155\|ref\|ZP_00793741.1\| COG3954: Phosphoribulokinase [Yersinia pseudotuberculosis IP 31758], ... gi\|165927840, gi... - gi\|165927840\|ref\|ZP_02223672.1\| putative phosphoribulokinase [Yersinia pestis biovar Orientalis str.... gi\|167051483, gi... - gi\|167398979\|ref\|ZP_02304503.1\| putative phosphoribulokinase [Yersinia pestis biovar Antiqua str. UG... gi\|166205573, gi... - gi\|166213275\|ref\|ZP_02239310.1\| putative phosphoribulokinase [Yersinia pestis biovar Antiqua str. B4... gi\|167425605, gi... - gi\|167425605\|ref\|ZP_02317358.1\| putative phosphoribulokinase [Yersinia pestis biovar Mediaevalis str... gi\|167419323, gi... - gi\|167419323\|ref\|ZP_02311076.1\| putative phosphoribulokinase [Yersinia pestis biovar Orientalis str....	256.0	[0..1]	[288..1]
gi\|91074406, gi\|... - gi\|91212832\|ref\|YP_542818.1\| putative phosphoribulokinase [Escherichia coli UTI89], gi\|91074406\|gb\|A... gi\|218555900, gi... - gi\|218555900\|ref\|YP_002388813.1\| phosphoribulokinase [Escherichia coli IAI1], gi\|218362668\|emb\|CAR00... gi\|227883490, gi... - gi\|227883490\|ref\|ZP_04001295.1\| phosphoribulokinase [Escherichia coli 83972], gi\|227839369\|gb\|EEJ498... gi\|218560417, gi... - gi\|218560417\|ref\|YP_002393330.1\| phosphoribulokinase [Escherichia coli S88], gi\|218367186\|emb\|CAR049... gi\|237703087, gi... - gi\|237703087\|ref\|ZP_04533568.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218429200, gi... - gi\|218691636\|ref\|YP_002399848.1\| phosphoribulokinase [Escherichia coli ED1a], gi\|218429200\|emb\|CAR10... gi\|115514755, gi... - gi\|117625631\|ref\|YP_858954.1\| putative phosphoribulokinase PrkB [Escherichia coli APEC O1], gi\|11551...	255.0	[0..1]	[289..1]
gi\|75236956, gi\|... - gi\|75236956\|ref\|ZP_00721012.1\| COG3954: Phosphoribulokinase [Escherichia coli E110019], gi\|193068823...	255.0	[0..1]	[289..1]
gi\|37199984, gi\|... - gi\|37681233\|ref\|NP_935842.1\| phosphoribulokinase [Vibrio vulnificus YJ016], gi\|37199984\|dbj\|BAC95813...	255.0	[0..1]	[288..1]
gi\|27360863, gi\|... - gi\|27364718\|ref\|NP_760246.1\| phosphoribulokinase [Vibrio vulnificus CMCP6], gi\|27360863\|gb\|AAO09773....	254.0	[0..1]	[288..1]
lcl\|NC_016856.1_... - [gene=prkB] [protein=putative phosphoribulokinase] [protein_id=YP_005239656.1] [location=3627827..36... gi\|214000201 - gi\|214000201\|ref\|ZP_03410936.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typ... gi\|238913587 - gi\|238913587\|ref\|ZP_04657424.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Ten... gi\|62129601, gi\|... - gi\|62181968\|ref\|YP_218385.1\| putative phosphoribulokinase [Salmonella enterica subsp. enterica serov... gi\|56415382, gi\|... - gi\|56415382\|ref\|YP_152457.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Paraty... gi\|205327592, gi... - gi\|205327592\|gb\|EDZ14356.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|168235051, gi... - gi\|197291406\|gb\|EDY30758.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|205338920, gi... - gi\|205338920\|gb\|EDZ25684.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|205350432, gi... - gi\|205350432\|gb\|EDZ37063.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|161365859, gi... - gi\|161616495\|ref\|YP_001590460.1\| hypothetical protein SPAB_04310 [Salmonella enterica subsp. enteric... gi\|205325700, gi... - gi\|205325700\|gb\|EDZ13539.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|29144307, gi\|... - gi\|29144307\|ref\|NP_807649.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16762820 - gi\|16762820\|ref\|NP_458437.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16505126, gi\|... - gi\|25287545\|pir\|\|AI1002 phosphoribulokinase (EC 2.7.1.19) [imported] - Salmonella enterica subsp. en... gi\|16766752, gi\|... - gi\|16766752\|ref\|NP_462367.1\| putative phosphoribulokinase [Salmonella typhimurium LT2], gi\|16422021\|... gi\|213052060 - gi\|213052060\|ref\|ZP_03344938.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typ... gi\|213426764 - gi\|213426764\|ref\|ZP_03359514.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typ... gi\|213649015 - gi\|213649015\|ref\|ZP_03379068.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typ... gi\|213857517 - gi\|213857517\|ref\|ZP_03384488.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Typ... gi\|198242648, gi... - gi\|198242648\|ref\|YP_002217425.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enter... gi\|199605990, gi... - gi\|200388892\|ref\|ZP_03215504.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enteri... gi\|204322009, gi... - gi\|204928576\|ref\|ZP_03219775.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enteri... gi\|206710508, gi... - gi\|207858705\|ref\|YP_002245356.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar En... gi\|194712335, gi... - gi\|194736833\|ref\|YP_002116406.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enter... gi\|197248101, gi... - gi\|197248101\|ref\|YP_002148383.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enter... gi\|197242294, gi... - gi\|197264039\|ref\|ZP_03164113.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enteri... gi\|197095789, gi... - gi\|197364312\|ref\|YP_002143949.1\| phosphoribulokinase [Salmonella enterica subsp. enterica serovar Pa... gi\|195632103, gi... - gi\|195632103\|gb\|EDX50587.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|205344658, gi... - gi\|205344658\|gb\|EDZ31422.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enterica s... gi\|194401248, gi... - gi\|194442585\|ref\|YP_002042715.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enter... gi\|194410094, gi... - gi\|194451790\|ref\|YP_002047487.1\| phosphoribulokinase/uridine kinase family protein [Salmonella enter...	254.0	[0..1]	[289..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR  60
   61 DAGRHISYFG PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL 120
  121 PEPTDVLFYE GLHGGVVTPQ HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM 180
  181 DSVVRSMEDY INYITPQFSR THLNFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI 240
  241 DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.154902
Match:	1a7jA
Description:	PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	0.310795123901245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: