YRC Public Data Repository - Protein Structure Prediction

Protein:	KDUI_ECOLI
Organism:	Escherichia coli
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDUI_ECOLI.

Description	E-value	Query Range	Subject Range
KDUI_ECOL5 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UP... KDUI_ECO45 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC)... KDUI_ECO81 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O81 (strain ED1a) GN=kduI P... KDUI_ECOL6 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC... KDUI_ECO7I - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC... gi\|226899535, gi... - gi\|237706495\|ref\|ZP_04536976.1\| 5-keto-4-deoxyuronate isomerase [Escherichia sp. 3_2_53FAA], gi\|2268... KDUI_ECOUT - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=kd... KDUI_ECOLU - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 ... gi\|227834679, gi... - gi\|227888410\|ref\|ZP_04006215.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli 83972], gi\|2278346... KDUI_ECOL6 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O6 GN=kduI PE=3 SV=1 gi\|75239207, gi\|... - gi\|75239207\|ref\|ZP_00723180.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli F11], gi\|1...	418.0	[0..1]	[278..1]
gi\|194433042, gi... - gi\|83569881\|ref\|ZP_00921329.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Shigella dysenteriae 1012],...	418.0	[0..1]	[278..1]
gi\|251786120, gi... - gi\|251786120\|ref\|YP_003000424.1\| hypothetical protein B21_02654 [Escherichia coli BL21], gi\|24237839... KDUI_SHISS - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Shigella sonnei (strain Ss046) GN=kduI PE=3 ... gi\|253974672, gi... - gi\|254162771\|ref\|YP_003045879.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli B str. REL606], g... gi\|194421110, gi... - gi\|83584701\|ref\|ZP_00923366.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli 101-1], gi... gi\|253978838, gi... - gi\|254289531\|ref\|YP_003055279.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli BL21(DE3)], gi\|25...	417.0	[0..1]	[278..1]
KDUI_ECO24 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O139:H28 (strain E24377A / ...	417.0	[0..1]	[278..1]
gi\|192930759, gi... - gi\|75258462\|ref\|ZP_00729884.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli E22], gi\|1... gi\|191165974, gi... - gi\|75230827\|ref\|ZP_00717285.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli B7A], gi\|1... gi\|75215022, gi\|... - gi\|75215022\|ref\|ZP_00713485.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli E110019], ... KDUI_ECOSE - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli (strain SE11) GN=kduI PE=3 ... gi\|194426335, gi... - gi\|75212524\|ref\|ZP_00712548.1\| COG3717: 5-keto 4-deoxyuronate isomerase [Escherichia coli B171], gi\|... KDUI_ECO55 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli (strain 55989 / EAEC) GN=kd...	415.0	[0..1]	[278..1]
KDUI_SHIF8 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Shigella flexneri serotype 5b (strain 8401) ...	415.0	[0..1]	[278..1]
KDUI_SHIFL - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Shigella flexneri GN=kduI PE=3 SV=1 gi\|24053258, gi\|... - gi\|24114122\|ref\|NP_708632.1\| 5-keto-4-deoxyuronate isomerase [Shigella flexneri 2a str. 301], gi\|240... gi\|30042441, gi\|... - gi\|30064184\|ref\|NP_838355.1\| 5-keto-4-deoxyuronate isomerase [Shigella flexneri 2a str. 2457T], gi\|3...	414.0	[0..1]	[278..1]
gi\|55670779, gi\|... - gi\|55670780\|pdb\|1X8M\|F Chain F, X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4- Deoxyuronate Is...	414.0	[0..1]	[278..3]
gi\|208738986, gi... - gi\|208818863\|ref\|ZP_03259183.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia co... gi\|208812215, gi... - gi\|208812215\|ref\|ZP_03253544.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia co... gi\|217319642, gi... - gi\|217327275\|ref\|ZP_03443358.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia co... KDUI_ECO5E - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EH... gi\|189377613, gi... - gi\|189377613\|gb\|EDU96029.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|189373852, gi... - gi\|189373852\|gb\|EDU92268.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|208808877, gi... - gi\|208808877\|ref\|ZP_03251214.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia co... gi\|195936447 - gi\|195936447\|ref\|ZP_03081829.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli O157:H7 str. EC402... gi\|189363829, gi... - gi\|189363829\|gb\|EDU82248.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|189369214, gi... - gi\|189369214\|gb\|EDU87630.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|168778838, gi... - gi\|189003163\|gb\|EDU72149.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|187768806, gi... - gi\|187768806\|gb\|EDU32650.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|168753761, gi... - gi\|189358745\|gb\|EDU77164.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|168747697, gi... - gi\|188017903\|gb\|EDU56025.1\| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Escherichia coli O... gi\|254594182, gi... - gi\|254794782\|ref\|YP_003079619.1\| predicted 5-keto 4-deoxyuronate isomerase [Escherichia coli O157:H7... gi\|13363172, gi\|... - gi\|15832954\|ref\|NP_311727.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli O157:H7 str. Sakai], ... gi\|12517335, gi\|... - gi\|15803363\|ref\|NP_289396.1\| 5-keto-4-deoxyuronate isomerase [Escherichia coli O157:H7 EDL933], gi\|1... gi\|209760890, gi... - pir\|\|G85936 probable 5-keto 4-deoxyuronate isomerase [similarity] - Escherichia coli (strain O157:H7... KDUI_ECO57 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Escherichia coli O157:H7 GN=kduI PE=3 SV=1	414.0	[0..1]	[278..1]
KDUI_YERPB - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Yersinia pseudotuberculosis serotype IB (str... KDUI_YERP3 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Yersinia pseudotuberculosis serotype O:1b (s... KDUI_YERPY - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Yersinia pseudotuberculosis serotype O:3 (st...	412.0	[0..1]	[278..1]

Back

Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRQSIHSA HAKTLDTQGL RNEFLVEKVF VADEYTMVYS HIDRIIVGGI MPITKTVSVG  60
   61 GEVGKQLGVS YFLERRELGV INIGGAGTIT VDGQCYEIGH RDALYVGKGA KEVVFASIDT 120
  121 GTPAKFYYNC APAHTTYPTK KVTPDEVSPV TLGDNLTSNR RTINKYFVPD VLETCQLSMG 180
  181 LTELAPGNLW NTMPCHTHER RMEVYFYFNM DDDACVFHMM GQPQETRHIV MHNEQAVISP 240
  241 SWSIHSGVGT KAYTFIWGMV GENQVFDDMD HVAVKDLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1x8mA
Description:	X-ray structure of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits