YRC Public Data Repository - Protein Structure Prediction

Protein:	KDTA_ECOLI
Organism:	Escherichia coli
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|253979618, gi... - gi\|254290311\|ref\|YP_003056059.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli BL21... gi\|242379157, gi... - gi\|251786884\|ref\|YP_003001188.1\| hypothetical protein B21_03442 [Escherichia coli BL21], gi\|24237915... gi\|254163561, gi... - gi\|254163561\|ref\|YP_003046669.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli B st... gi\|194435685, gi... - gi\|83588520\|ref\|ZP_00927144.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co... gi\|224613060 - gi\|224613060\|dbj\|BAH24280.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli B] gi\|218707267, gi... - gi\|218707267\|ref\|YP_002414786.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli UMN0... gi\|170682133, gi... - gi\|170682133\|ref\|YP_001745933.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli SMS-...	309.0	[0..1]	[425..1]
gi\|187730590, gi... - gi\|75179734\|ref\|ZP_00699721.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Shigella boydi...	308.0	[0..1]	[425..1]
gi\|115515032, gi... - gi\|117625908\|ref\|YP_859231.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli APEC O1... gi\|91074723, gi\|... - gi\|91213149\|ref\|YP_543135.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli UTI89], ... gi\|237703403, gi... - gi\|237703403\|ref\|ZP_04533884.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia sp. 3_2_53... gi\|218560705, gi... - gi\|218560705\|ref\|YP_002393618.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli S88]...	308.0	[0..1]	[425..1]
gi\|82779123, gi\|... - gi\|82779123\|ref\|YP_405472.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella dysenteriae Sd19...	308.0	[0..1]	[425..1]
gi\|218429481, gi... - gi\|218691917\|ref\|YP_002400129.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli ED1a... gi\|81247407, gi\|... - gi\|82545996\|ref\|YP_409943.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella boydii Sb227], g...	308.0	[0..1]	[425..1]
gi\|191170309, gi... - gi\|75242588\|ref\|ZP_00726332.1\| COG1519: 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia co...	307.0	[0..1]	[425..1]
gi\|29144074, gi\|... - gi\|29144074\|ref\|NP_807416.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica subsp... gi\|16762585 - gi\|16762585\|ref\|NP_458202.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica subsp... gi\|16504890, gi\|... - gi\|25344937\|pir\|\|AI0971 3-deoxy-D-manno-octulosonic-acid transferase [imported] - Salmonella enteric... gi\|213855124 - gi\|213855124\|ref\|ZP_03383364.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213028554 - gi\|213028554\|ref\|ZP_03343001.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213161286 - gi\|213161286\|ref\|ZP_03346996.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213425234 - gi\|213425234\|ref\|ZP_03357984.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su... gi\|213647922 - gi\|213647922\|ref\|ZP_03377975.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica su...	306.0	[0..1]	[425..1]
gi\|110617237, gi... - gi\|110807689\|ref\|YP_691209.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella flexneri 5 str.... gi\|24114902, gi\|... - gi\|24114902\|ref\|NP_709412.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella flexneri 2a str.... gi\|30043352, gi\|... - gi\|30065091\|ref\|NP_839262.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Shigella flexneri 2a str....	306.0	[0..1]	[425..1]
gi\|12518389, gi\|... - gi\|15804174\|ref\|NP_290213.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Escherichia coli O157:H7 ... gi\|25344940 - gi\|25344940\|pir\|\|E86039 hypothetical protein kdtA [imported] - Escherichia coli (strain O157:H7, su...	306.0	[0..1]	[425..1]
gi\|56415614, gi\|... - gi\|56415614\|ref\|YP_152689.1\| 3-deoxy-D-manno-octulosonic-acid transferase [Salmonella enterica subsp...	305.0	[0..1]	[425..1]

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Predicted Domain #1

Region A:
Residues: [1-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELLYTALL YLIQPLIWIR LWVRGRKAPA YRKRWGERYG FYRHPLKPGG IMLHSVSVGE  60
   61 TLAAIPLVRA LRHRYPDLPI TVTTMTPTGS ERVQSAFGKD VQHVYLPYDL PDALNRFLNK 120
  121 VDPKLVLIME TELWPNLIAA LHKRKIPLVI ANARLSARSA AGYAKLGKFV RRLLRRITLI 180
  181 AAQNEEDGAR FVALGAKNNQ VTVTGSLKFD ISVTPQLAAK AVTLRRQWAP HRPVWIATST 240
  241 HEGEESVVIA AHQALLQQFP NLLLILVPRH PERFPDAINL VRQAGLSYIT RSSGEVPSTS 300
  301 TQVVVGDTMG ELMLLYGIAD LAFVGGSLVE RGGHNPLEAA AHAIPVLMGP HTFNFKDICA 360
  361 RLEQASGLIT VTDATTLAKE VSSLLTDADY RSFYGRHAVE VLYQNQGALQ RLLQLLEPYL 420
  421 PPKTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits