YRC Public Data Repository - Protein Structure Prediction

Protein:	KDSD_ECOLI
Organism:	Escherichia coli
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDSD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|154356789, gi... - gi\|94492344\|ref\|ZP_01299552.1\| hypothetical protein CburD_01000676 [Coxiella burnetii Dugway 7E9-12]...	228.0	[0..6]	[328..1]
gi\|145209332, gi... - gi\|145597636\|ref\|YP_001161712.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Pestoides F], gi... gi\|108813619, gi... - gi\|108813619\|ref\|YP_649386.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Nepal516], gi\|10877... gi\|21956816, gi\|... - gi\|22124068\|ref\|NP_667491.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis KIM], gi\|21956816\|gb... gi\|77630521, gi\|... - gi\|77630521\|ref\|ZP_00793107.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|108809717, gi... - gi\|108809717\|ref\|YP_653633.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Antiqua], gi\|108781... gi\|169749295, gi... - gi\|170022761\|ref\|YP_001719266.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis YPII... gi\|89102213 - gi\|89102213\|ref\|ZP_01174864.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|186897005, gi... - gi\|186897005\|ref\|YP_001874117.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis PB1/... gi\|45438432, gi\|... - gi\|45443563\|ref\|NP_995102.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis biovar Microtus str.... gi\|77633100 - gi\|77633100\|ref\|ZP_00795252.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form...	226.0	[0..1]	[328..30]
gi\|95926245, gi\|... - gi\|95926245\|ref\|ZP_01309052.1\| hypothetical protein CburR_01001942 [Coxiella burnetii RSA 331], gi\|1... gi\|29541350, gi\|... - gi\|29654084\|ref\|NP_819776.1\| arabinose-5-phosphate isomerase [Coxiella burnetii RSA 493], gi\|2954135...	226.0	[0..6]	[327..1]
gi\|167054267, gi... - gi\|167426740\|ref\|ZP_02318493.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Mediaevalis ... gi\|167470179 - gi\|167470179\|ref\|ZP_02334883.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis FV-1] gi\|166011373, gi... - gi\|166011373\|ref\|ZP_02232271.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Antiqua str.... gi\|166211854, gi... - gi\|166211854\|ref\|ZP_02237889.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Antiqua str.... gi\|167050028, gi... - gi\|167400660\|ref\|ZP_02306169.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Antiqua str.... gi\|167420789, gi... - gi\|167420789\|ref\|ZP_02312542.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Orientalis s... gi\|115349200, gi... - gi\|218930589\|ref\|YP_002348464.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis CO92], gi\|161237... KDSD_YERPE - Arabinose 5-phosphate isomerase KdsD OS=Yersinia pestis GN=kdsD PE=3 SV=2 gi\|51591095, gi\|... - gi\|51597813\|ref\|YP_072004.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis IP 32953... gi\|165928116, gi... - gi\|165928116\|ref\|ZP_02223948.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Orientalis s... Q665J6\|Q665J6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|165937422, gi... - gi\|165937422\|ref\|ZP_02225985.1\| arabinose 5-phosphate isomerase [Yersinia pestis biovar Orientalis s... gi\|149288989, gi... - gi\|153997352\|ref\|ZP_02022452.1\| arabinose 5-phosphate isomerase [Yersinia pestis CA88-4125], gi\|1492... gi\|153948490, gi... - gi\|153948490\|ref\|YP_001399439.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis IP 3... gi\|229836867, gi... - gi\|229836867\|ref\|ZP_04457032.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Pestoides A], gi\|... gi\|229695599, gi... - gi\|229839233\|ref\|ZP_04459392.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis biovar Orientalis... gi\|229687290, gi... - gi\|229899798\|ref\|ZP_04514939.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis biovar Orientalis... gi\|229904113, gi... - gi\|229904113\|ref\|ZP_04519224.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Nepal516], gi\|229...	225.0	[0..1]	[328..1]
gi\|56459512, gi\|... - gi\|56459512\|ref\|YP_154793.1\| sugar phosphate isomerase involved in capsule formation [Idiomarina loi...	223.0	[0..5]	[328..1]
gi\|150960935, gi... - gi\|94415571\|ref\|ZP_01295411.1\| hypothetical protein PaerP_01002734 [Pseudomonas aeruginosa PA7], gi\|...	222.0	[0..6]	[328..1]
gi\|49088192 - gi\|49088192\|gb\|AAT51542.1\| PA4457 [synthetic construct]	222.0	[0..4]	[328..1]
gi\|114227768, gi... - gi\|78701814\|ref\|ZP_00866261.1\| KpsF/GutQ [Alkalilimnicola ehrlichei MLHE-1], gi\|78520696\|gb\|EAP33956...	221.0	[0..9]	[328..21]
gi\|254244729, gi... - gi\|254244729\|ref\|ZP_04938051.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|218773776, gi... - gi\|218893548\|ref\|YP_002442417.1\| putative sugar isomerase [Pseudomonas aeruginosa LESB58], gi\|218773... gi\|11348185 - pir\|\|A83087 conserved hypothetical protein PA4457 [imported] - Pseudomonas aeruginosa (strain PAO1) KDSD_PSEAE - Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS ...	221.0	[0..4]	[328..1]
gi\|194549866, gi... - gi\|254238881\|ref\|ZP_04932204.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116052489, gi... - gi\|116052489\|ref\|YP_792802.1\| hypothetical protein PA14_57890 [Pseudomonas aeruginosa UCBPP-PA14], g...	221.0	[0..4]	[328..1]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHVELQPGF DFQQAGKEVL AIERECLAEL DQYINQNFTL ACEKMFWCKG KVVVMGMGKS  60
   61 GHIGRKMAAT FASTGTPSFF VHPGEAAHGD LGMVTPQDVV IAISNSGESS EITALIPVLK 120
  121 RLHVPLICIT GRPESSMARA ADVHLCVKVA KEACPLGLAP TSSTTATLVM GDALAVALLK 180
  181 ARGFTAEDFA LSHPGGALGR KLLLRVNDIM HTGDEIPHVK KTASLRDALL EVTRKNLGMT 240
  241 VICDDNMMIE GIFTDGDLRR VFDMGVDVRQ LSIADVMTPG GIRVRPGILA VEALNLMQSR 300
  301 HITSVMVADG DHLLGVLHMH DLLRAGVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1moqA
Description:	ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	2.51573700304958	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.27102475335512	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.11549102314657	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.718035369881213	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.543772038478781	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: