YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPZ_ECOLI
Organism:	Escherichia coli
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPZ_ECOLI.

Description	E-value	Query Range	Subject Range
YCIB_THICR - Probable intracellular septation protein A OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_1232 PE...	209.0	[0..1]	[177..1]
gi\|86147772, gi\|... - gi\|86147772\|ref\|ZP_01066079.1\| putative intracellular septation protein [Vibrio sp. MED222], gi\|8583...	205.0	[0..1]	[177..1]
gi\|37679397, gi\|... - gi\|37679397\|ref\|NP_934006.1\| putative intracellular septation protein [Vibrio vulnificus YJ016], gi\|...	202.0	[0..1]	[178..20]
gi\|73541088, gi\|... - gi\|73541088\|ref\|YP_295608.1\| putative intracellular septation protein [Ralstonia eutropha JMP134], g...	201.0	[0..1]	[175..25]
gi\|27348720, gi\|... - gi\|27375583\|ref\|NP_767112.1\| putative intracellular septation protein [Bradyrhizobium japonicum USDA...	196.0	[0..2]	[176..62]
YCIB_CUPNH - Probable intracellular septation protein A OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428...	194.0	[0..1]	[175..1]
gi\|83749029, gi\|... - gi\|83749029\|ref\|ZP_00946036.1\| Intracellular septation protein [Ralstonia solanacearum UW551], gi\|83... gi\|207743081, gi... - gi\|207743081\|ref\|YP_002259473.1\| intracellular septation protein [Ralstonia solanacearum IPO1609], g... gi\|206588762, gi... - gi\|207723561\|ref\|YP_002253960.1\| intracellular septation protein [Ralstonia solanacearum MolK2], gi\|...	194.0	[0..1]	[178..1]
YCIB_HAHCH - Probable intracellular septation protein A OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_02130 PE=...	193.0	[0..1]	[179..1]
YCIB_RALSO - Probable intracellular septation protein A OS=Ralstonia solanacearum (strain GMI1000) GN=RSc1746 PE=... ISPZ_RALSO - Probable intracellular septation protein OS=Ralstonia solanacearum GN=ispZ PE=3 SV=1	193.0	[0..1]	[178..1]
YCIB_VIBVY - Probable intracellular septation protein A OS=Vibrio vulnificus (strain YJ016) GN=VV1213 PE=3 SV=2 ISPZ_VIBVU, YCIB... - Probable intracellular septation protein A OS=Vibrio vulnificus GN=VV1_3073 PE=3 SV=1, Probable intr... YCIB_VIBVU - Probable intracellular septation protein A OS=Vibrio vulnificus (strain CMCP6) GN=VV1_3073 PE=3 SV=1	192.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFLDFLPL VVFFAFYKIY DIYAATAALI VATAIVLIYS WVRFRKVEKM ALITFVLVVV  60
   61 FGGLTLFFHN DEFIKWKVTV IYALFAGALL VSQWVMKKPL IQRMLGKELT LPQPVWSKLN 120
  121 LAWAVFFILC GLANIYIAFW LPQNIWVNFK VFGLTALTLI FTLLSGIYIY RHMPQEDKS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	118.677781
Match:	PF04279.6
Description:	No description for PF04279.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits