YRC Public Data Repository - Protein Structure Prediction

Protein:	INB4_ECOLI, INSB...
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INB4_ECOLI, INSB....

Description	E-value	Query Range	Subject Range
gi\|58383282, gi\|... - gi\|58383285\|ref\|YP_194857.1\| B'-InsB [Salmonella typhimurium], gi\|58383282\|ref\|YP_194853.1\| B'-InsB ... gi\|62550898, gi\|... - gi\|62550898\|emb\|CAH64821.1\| IS1 transposase [uncultured bacterium], gi\|62550887\|emb\|CAH64810.1\| IS1 ... gi\|188573946, gi... - gi\|75515490\|ref\|ZP_00737647.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|157066603, gi... - gi\|75197412\|ref\|ZP_00707482.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|251785947, gi... - gi\|251786628\|ref\|YP_003000932.1\| hypothetical protein B21_03179 [Escherichia coli BL21], gi\|25178594... gi\|254289356, gi... - gi\|254290053\|ref\|YP_003055801.1\| IS1 protein InsB [Escherichia coli BL21(DE3)], gi\|254289356\|ref\|YP_... gi\|253975204, gi... - gi\|254163303\|ref\|YP_003046411.1\| IS1 protein InsB [Escherichia coli B str. REL606], gi\|254162595\|ref... gi\|76781954, gi\|... - gi\|88770316\|gb\|ABD51753.1\| InsB [Escherichia coli APEC O1], gi\|88770300\|gb\|ABD51737.1\| InsB [Escheri... gi\|91075330, gi\|... - gi\|91213756\|ref\|YP_543742.1\| IS1 protein InsB [Escherichia coli UTI89], gi\|91075330\|gb\|ABE10211.1\| I... gi\|192956494, gi... - gi\|193070175\|ref\|ZP_03051120.1\| IS1 transposase orfB [Escherichia coli E110019], gi\|192956494\|gb\|EDV... gi\|194358569, gi... - gi\|194446865\|ref\|YP_002038949.1\| IS1 transposase orfB [Salmonella enterica subsp. enterica serovar K... gi\|157418266, gi... - gi\|157418266\|ref\|YP_001481338.1\| hypothetical protein APECO1_O1CoBM182 [Escherichia coli APEC O1], g... gi\|218349688, gi... - gi\|218534508\|ref\|YP_002401038.1\| transposase [Escherichia coli S88], gi\|218534484\|ref\|YP_002401014.1... gi\|194337945 - gi\|194337945\|emb\|CAQ51357.1\| transposition protein [Salmonella enterica subsp. enterica serovar Typh...	265.0	[0..1]	[167..1]
gi\|190901172, gi... - gi\|75231414\|ref\|ZP_00717802.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|193070199, gi... - gi\|75235017\|ref\|ZP_00719282.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|221218533, gi... - gi\|221218533\|ref\|YP_002527491.1\| IS1 transposase InsB [Escherichia coli], gi\|215252861\|gb\|ACJ63520.1... gi\|18466540, gi\|... - gi\|18466540\|ref\|NP_569348.1\| putative IS1 transposase [Salmonella enterica subsp. enterica serovar T... gi\|242379862, gi... - gi\|251787589\|ref\|YP_003001893.1\| hypothetical protein B21_04179 [Escherichia coli BL21], gi\|25178557... gi\|254288758, gi... - gi\|254291015\|ref\|YP_003056765.1\| IS1 protein InsB [Escherichia coli BL21(DE3)], gi\|254288989\|ref\|YP_... gi\|254160659, gi... - gi\|254162228\|ref\|YP_003045336.1\| IS1 protein InsB [Escherichia coli B str. REL606], gi\|254161970\|ref... gi\|170520333, gi... - gi\|170682615\|ref\|YP_001745017.1\| IS1 transposase orfB [Escherichia coli SMS-3-5], gi\|170650859\|ref\|Y... gi\|194435774, gi... - gi\|83588589\|ref\|ZP_00927213.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|218698095, gi... - gi\|218698161\|ref\|YP_002405828.1\| Insertion element IS1 1/5/6 protein InsB [Escherichia coli 55989], ... gi\|194426682, gi... - gi\|75212091\|ref\|ZP_00712131.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri... gi\|218689637, gi... - gi\|218690162\|ref\|YP_002398374.1\| IS1 transposase InsAB' [Escherichia coli ED1a], gi\|218689637\|ref\|YP...	264.0	[0..1]	[167..1]
gi\|74313528, gi\|... - gi\|74313528\|ref\|YP_311947.1\| IS1 ORF [Shigella sonnei Ss046], gi\|73857005\|gb\|AAZ89712.1\| IS1 ORF [Sh...	264.0	[0..1]	[167..1]
gi\|157067912, gi... - gi\|75196748\|ref\|ZP_00706818.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Escheri...	263.0	[0..1]	[167..1]
gi\|187730604, gi... - gi\|75177315\|ref\|ZP_00697404.1\| COG1662: Transposase and inactivated derivatives, IS1 family [Shigell...	262.0	[0..1]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGNSPHYGR WPQHDFPPFK KLRPQSVTSR IQPGSDVIVC AEMDEQWGYV GAKSRQRWLF  60
   61 YAYDRLRKTV VAHVFGERTM ATLGRLMSLL SPFDVVIWMT DGWPLYESRL KGKLHVISKR 120
  121 YTQRIERYNL NLRQHLARLG RKSLSFSKSV ELHDKVIGHY LNIKHYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1k6yA
Description:	N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.638749293464446	bayes_pls_golite062009
hydrolase activity	0.094903118031094	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: