YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM8_NEUCR, IM08...
Organism:	Neurospora crassa
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM8_NEUCR, IM08....

Description	E-value	Query Range	Subject Range
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	107.0	[0..1]	[92..608]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	104.0	[0..7]	[92..165]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	99.0	[0..20]	[87..123]
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	98.0	[0..1]	[88..325]
TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica (strain CLIB 12... TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica GN=TIM10 PE=3 S...	94.0	[0..3]	[81..1]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	93.0	[0..1]	[89..1]
gi\|119182702, gi... - gi\|90301257\|gb\|EAS30888.1\| hypothetical protein CIMG_06367 [Coccidioides immitis RS], gi\|119182702\|r... gi\|240109368 - gi\|240109368\|gb\|EER27537.1\| Tim10/DDP family zinc finger containing protein [Coccidioides posadasii ...	92.0	[0..1]	[87..1]
gi\|109123504 - gi\|109123504\|ref\|XP_001107083.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog B ...	92.0	[0..8]	[92..1]
TIM8B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=1 SV=1 TIM8B_RAT - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 S...	92.0	[0..8]	[92..1]
gi\|114690216 - gi\|114690216\|ref\|XP_001134944.1\| PREDICTED: similar to small zinc finger-like protein [Pan troglodyt...	91.0	[0..11]	[92..37]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPQADLDL LNEKDKNELR GFISNETQRQ RVQGQTHALT DSCWKKCVTS PIKTNQLDKT  60
   61 EAVCMADCVE RFLDVNLTIM AHVQKITRGG SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits