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View Structure Prediction Details

Protein: IDNT_ECOLI
Organism: Escherichia coli
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDNT_ECOLI.

Description E-value Query
Range
Subject
Range
gi|83363652, gi|... - gi|83375123|ref|ZP_00919887.1| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...
209.0 [0..4] [437..375]
gi|25504467 - pir||A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm...
gi|16262534, gi|... - gi|16262534|ref|NP_435327.1| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi|14523143...
182.0 [0..53] [437..1]
gi|42548023, gi|... - gi|46116990|ref|XP_384513.1| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi|42548023|gb|E...
170.0 [0..5] [400..515]
gi|111063706, gi... - gi|169608556|ref|XP_001797697.1| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi|11...
163.0 [0..5] [438..500]
gi|84387730, gi|... - gi|84387730|ref|ZP_00990746.1| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi|8437...
gi|218323197, gi... - gi|218710178|ref|YP_002417799.1| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...
162.0 [0..5] [436..1]
gi|86147630, gi|... - gi|86147630|ref|ZP_01065939.1| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi|85834541|g...
162.0 [0..5] [436..1]
gi|254229910, gi... - gi|75854030|ref|ZP_00761754.1| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...
162.0 [0..7] [436..3]
gi|26111606, gi|... - gi|26251174|ref|NP_757214.1| Gnt-II system L-idonate transporter [Escherichia coli CFT073], gi|26111...
gi|170684304, gi... - gi|170684304|ref|YP_001746669.1| Gnt-II system L-idonate transporter [Escherichia coli SMS-3-5], gi|...
gi|117626609, gi... - gi|117626609|ref|YP_859932.1| L-idonate and D-gluconate transporter [Escherichia coli APEC O1], gi|1...
gi|218702968, gi... - gi|218702968|ref|YP_002410597.1| L-idonate and D-gluconate transporter [Escherichia coli IAI39], gi|...
gi|227886681, gi... - gi|227886681|ref|ZP_04004486.1| GntP family gluconate:proton (H+) symporter [Escherichia coli 83972]...
gi|91075395, gi|... - gi|91213821|ref|YP_543807.1| IdnT L-idonate Gnt tranporter [Escherichia coli UTI89], gi|91075395|gb|...
gi|237703941, gi... - gi|237703941|ref|ZP_04534422.1| gnt-II system L-idonate transporter [Escherichia sp. 3_2_53FAA], gi|...
gi|110644624, gi... - gi|110644624|ref|YP_672354.1| Gnt-II system L-idonate transporter [Escherichia coli 536], gi|1103462...
gi|75228078, gi|... - gi|75228078|ref|ZP_00714753.1| COG2610: H+/gluconate symporter and related permeases [Escherichia co...
gi|74314744, gi|... - gi|74314744|ref|YP_313163.1| L-idonate transporter [Shigella sonnei Ss046], gi|73858221|gb|AAZ90928....
162.0 [0..1] [439..1]
gi|194554935, gi... - gi|84323909|ref|ZP_00971975.1| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...
gi|115588537, gi... - gi|32044546|ref|ZP_00141647.1| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...
162.0 [0..5] [438..1]
gi|254164190, gi... - gi|254164190|ref|YP_003047300.1| L-idonate and D-gluconate transporter [Escherichia coli B str. REL6...
gi|253326156, gi... - gi|254290940|ref|YP_003056690.1| L-idonate and D-gluconate transporter [Escherichia coli BL21(DE3)],...
gi|242379784, gi... - gi|251787511|ref|YP_003001815.1| hypothetical protein B21_04095 [Escherichia coli BL21], gi|24237978...
gi|31323184 - gi|31323184|gb|AAP43528.1| IdnT [Escherichia coli B]
162.0 [0..1] [439..1]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIIAAGV ALLLILMIGF KVNGFIALVL VAAVVGFAEG MDAQAVLHSI QNGIGSTLGG  60
   61 LAMILGFGAM LGKLISDTGA AQRIATTLIA TFGKKRVQWA LVITGLVVGL AMFFEVGFVL 120
  121 LLPLVFTIVA SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPLLYVGVP MVAALSVTHC FLPPHPGPTA IATIFEANLG TTLLYGFIIT IPTVIVAGPL  60
   61 FSKLLTRFEK APPEGLFNPH LFSEEEMPSF WNSIFAAVIP VILMAIAAVC EITLPKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTVRLFFEFV GNPAVALFIA IVIAIFTLGR RNGRTIEQIM DIIGDSIGAI AMIVFIIAGG  60
   61 GAFKQVLVDS GVGHYISHLM TGTTLSPLLM CWTVAALLRI ALGSATVAAI TTAGVVLPII 120
  121 NVTHADPALM VLATGAGSVI ASHVNDPGFW LFKGYFNLTV GETLRTWTVM ETLISIMGLL 180
  181 GVLAINAVLH 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle