YRC Public Data Repository - Protein Structure Prediction

Protein:	IDNK_ECOLI
Organism:	Escherichia coli
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDNK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|191168714, gi... - gi\|75228081\|ref\|ZP_00714756.1\| COG3265: Gluconate kinase [Escherichia coli B7A], gi\|191168714\|ref\|ZP... gi\|226901856, gi... - gi\|237703944\|ref\|ZP_04534425.1\| thermosensitive gluconokinase [Escherichia sp. 3_2_53FAA], gi\|226901...	156.0	[0..1]	[187..1]
gi\|75242343, gi\|... - gi\|75242343\|ref\|ZP_00726105.1\| COG3265: Gluconate kinase [Escherichia coli F11], gi\|191170623\|ref\|ZP... gi\|26111609, gi\|... - gi\|26251177\|ref\|NP_757217.1\| D-gluconate kinase [Escherichia coli CFT073], gi\|26111609\|gb\|AAN83791.1... gi\|227836251, gi... - gi\|227886678\|ref\|ZP_04004483.1\| thermosensitive gluconokinase [Escherichia coli 83972], gi\|227836251...	155.0	[0..1]	[187..1]
gi\|75198116, gi\|... - gi\|75198116\|ref\|ZP_00708186.1\| COG3265: Gluconate kinase [Escherichia coli HS], gi\|157163743\|ref\|YP_...	155.0	[0..1]	[187..1]
gi\|74314747, gi\|... - gi\|74314747\|ref\|YP_313166.1\| D-gluconate kinase [Shigella sonnei Ss046], gi\|73858224\|gb\|AAZ90931.1\| ...	153.0	[0..1]	[187..1]
gi\|117626612, gi... - gi\|117626612\|ref\|YP_859935.1\| D-gluconate kinase [Escherichia coli APEC O1], gi\|115515736\|gb\|ABJ0381... gi\|91213824, gi\|... - gi\|91213824\|ref\|YP_543810.1\| D-gluconate kinase [Escherichia coli UTI89], gi\|91075398\|gb\|ABE10279.1\|...	152.0	[0..1]	[187..1]
gi\|56962388, gi\|... - gi\|56962388\|ref\|YP_174114.1\| adenylylsulfate kinase [Bacillus clausii KSM-K16], gi\|56908626\|dbj\|BAD6...	148.0	[0..2]	[169..27]
gi\|74002093 - gi\|74002093\|ref\|XP_863147.1\| PREDICTED: similar to Bifunctional 3-phosphoadenosine 5-phosphosulfate ...	148.0	[0..2]	[170..52]
gi\|50746429 - gi\|50746429\|ref\|XP_420493.1\| PREDICTED: similar to Bifunctional 3-phosphoadenosine 5-phosphosulfate ...	148.0	[0..2]	[169..424]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGESFILMG VSGSGKTLIG SKVAALLSAK FIDGDDLHPA KNIDKMSQGI PLSDEDRLPW  60
   61 LERLNDASYS LYKKNETGFI VCSSLKKQYR DILRKGSPHV HFLWLDGDYE TILARMQRRA 120
  121 GHFMPVALLK SQFEALERPQ ADEQDIVRID INHDIANVTE QCRQAVLAIR QNRICAKEGS 180
  181 ASDQRCE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.045757
Match:	1knqA
Description:	Gluconate kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: