YRC Public Data Repository - Protein Structure Prediction

Protein:	IDI_ECOLI
Organism:	Escherichia coli
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDI_ECOLI.

Description	E-value	Query Range	Subject Range
IDI_ECOL5 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=idi PE... gi\|190906512, gi... - gi\|75239232\|ref\|ZP_00723205.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli F11], gi\|...	157.0	[0..1]	[182..1]
gi\|83587716, gi\|... - gi\|83587716\|ref\|ZP_00926343.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli 101-1], g...	157.0	[0..1]	[182..1]
gi\|227888437, gi... - gi\|227888437\|ref\|ZP_04006242.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli 83972], gi... IDI_ECOL6 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6 GN=idi PE=3 SV=1 IDI_ECOL6 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE...	157.0	[0..1]	[182..1]
gi\|119191718, gi... - gi\|90305251\|gb\|EAS34882.1\| hypothetical protein CIMG_00236 [Coccidioides immitis RS], gi\|119191718\|r...	156.0	[0..1]	[174..52]
gi\|254162801, gi... - gi\|254162801\|ref\|YP_003045909.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli B str. RE... IDI_ECOSE - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain SE11) GN=idi PE=3 SV=1 IDI_SHIBS - Isopentenyl-diphosphate Delta-isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=idi PE=3 SV=... gi\|191166005, gi... - gi\|75230861\|ref\|ZP_00717319.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli B7A], gi\|... gi\|253772270, gi... - gi\|254289561\|ref\|YP_003055309.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli BL21(DE3)... gi\|188494401, gi... - gi\|75515329\|ref\|ZP_00737513.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli 53638], g...	156.0	[0..1]	[180..1]
gi\|50513320, gi\|... - gi\|50513321\|pdb\|1PVF\|B Chain B, E.Coli Ipp Isomerase In Complex With Diphosphate, gi\|50513320\|pdb\|1P...	156.0	[0..1]	[182..1]
gi\|254594240, gi... - gi\|254794840\|ref\|YP_003079677.1\| isopentenyl diphosphate isomerase [Escherichia coli O157:H7 str. TW... gi\|13363233, gi\|... - gi\|15833015\|ref\|NP_311788.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli O157:H7 str. ... IDI_ECO57 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7 GN=idi PE=3 SV=1 IDI_ECO24 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=idi ... IDI_ECO5E - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=idi PE... gi\|194415766, gi... - gi\|75212498\|ref\|ZP_00712522.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli B171], gi... gi\|208739346, gi... - gi\|208819223\|ref\|ZP_03259543.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O1... IDI_ECO8A - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O8 (strain IAI1) GN=idi PE=3 SV=1 gi\|217326944, gi... - gi\|217326944\|ref\|ZP_03443027.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O1... gi\|192930877, gi... - gi\|75258487\|ref\|ZP_00729909.1\| COG1443: Isopentenyldiphosphate isomerase [Escherichia coli E22], gi\|... IDI_SHISS - Isopentenyl-diphosphate Delta-isomerase OS=Shigella sonnei (strain Ss046) GN=idi PE=3 SV=1 gi\|168775765, gi... - gi\|187768734\|gb\|EDU32578.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|189363864, gi... - gi\|189363864\|gb\|EDU82283.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|189374002, gi... - gi\|189374002\|gb\|EDU92418.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|168778901, gi... - gi\|189003177\|gb\|EDU72163.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|15803425, gi\|... - gi\|15803425\|ref\|NP_289458.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli O157:H7 EDL93... gi\|195936506 - gi\|195936506\|ref\|ZP_03081888.1\| isopentenyl-diphosphate delta-isomerase [Escherichia coli O157:H7 st... gi\|209760618, gi... - pir\|\|E85944 probable enzyme Z4227 [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|189377687, gi... - gi\|189377687\|gb\|EDU96103.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|208734829, gi... - gi\|208813552\|ref\|ZP_03254881.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O1... gi\|208728880, gi... - gi\|208809079\|ref\|ZP_03251416.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O1... gi\|168747634, gi... - gi\|188017859\|gb\|EDU55981.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|168760016, gi... - gi\|189369318\|gb\|EDU87734.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H... gi\|189358649, gi... - gi\|189358649\|gb\|EDU77068.1\| isopentenyl-diphosphate delta-isomerase, type 1 [Escherichia coli O157:H...	156.0	[0..1]	[180..1]
IDI_ECOUT - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=idi PE=3 SV=1 IDI_ECO45 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=idi PE=3 ... IDI_ECO81 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O81 (strain ED1a) GN=idi PE=3 SV=1 gi\|237706468, gi... - gi\|237706468\|ref\|ZP_04536949.1\| isopentenyl-diphosphate delta-isomerase [Escherichia sp. 3_2_53FAA],... IDI_ECOK1 - Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O1:K1 / APEC GN=idi PE=3 SV=1	155.0	[0..1]	[182..1]

Back

Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTEHVILLN AQGVPTGTLE KYAAHTADTR LHLAFSSWLF NAKGQLLVTR RALSKKAWPG  60
   61 VWTNSVCGHP QLGESNEDAV IRRCRYELGV EITPPESIYP DFRYRATDPS GIVENEVCPV 120
  121 FAARTTSALQ INDDEVMDYQ WCDLADVLHG IDATPWAFSP WMVMQATNRE ARKRLSAFTQ 180
  181 LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1i9aA
Description:	Isopentenyl diphosphate isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: