YRC Public Data Repository - Protein Structure Prediction

Protein:	HYPC_ECOLI
Organism:	Escherichia coli
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187427883, gi... - gi\|75176411\|ref\|ZP_00696555.1\| COG0298: Hydrogenase maturation factor [Shigella boydii BS512], gi\|18... gi\|81246610, gi\|... - gi\|82545199\|ref\|YP_409146.1\| hydrogenase isoenzymes formation protein [Shigella boydii Sb227], gi\|81...	115.0	[0..1]	[90..1]
gi\|110806645, gi... - gi\|110806645\|ref\|YP_690165.1\| hydrogenase isoenzymes formation protein [Shigella flexneri 5 str. 840...	115.0	[0..1]	[90..1]
gi\|197938699, gi... - gi\|198244183\|ref\|YP_002216828.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp... gi\|238909623 - gi\|238909623\|ref\|ZP_04653460.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|197363736, gi... - gi\|197363736\|ref\|YP_002143373.1\| hydrogenase assembly chaperone [Salmonella enterica subsp. enterica... gi\|197240564, gi... - gi\|197262309\|ref\|ZP_03162383.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp.... gi\|197248820, gi... - gi\|197248820\|ref\|YP_002147755.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp... gi\|207858119, gi... - gi\|207858119\|ref\|YP_002244770.1\| hydrogenase assembly chaperone [Salmonella enterica subsp. enterica... gi\|205353800, gi... - gi\|205353800\|ref\|YP_002227601.1\| hydrogenase assembly chaperone [Salmonella enterica subsp. enterica... gi\|204322712, gi... - gi\|204928390\|ref\|ZP_03219590.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp.... gi\|62128992, gi\|... - gi\|62181359\|ref\|YP_217776.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp. en... gi\|200386968, gi... - gi\|200386968\|ref\|ZP_03213580.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp.... gi\|168820454, gi... - gi\|205342918\|gb\|EDZ29682.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|168464016, gi... - gi\|195633353\|gb\|EDX51767.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|205349058, gi... - gi\|205349058\|gb\|EDZ35689.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|168242588, gi... - gi\|205338176\|gb\|EDZ24940.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|194710770, gi... - gi\|194735268\|ref\|YP_002115810.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp... gi\|194470179, gi... - gi\|194470179\|ref\|ZP_03076163.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp.... gi\|194449653, gi... - gi\|194449653\|ref\|YP_002046819.1\| hydrogenase assembly chaperone [Salmonella enterica subsp. enterica... gi\|194401549, gi... - gi\|194442886\|ref\|YP_002042100.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp... gi\|224584635, gi... - gi\|224584635\|ref\|YP_002638433.1\| hydrogenase isoenzyme formation protein HypC [Salmonella enterica s... gi\|56129065, gi\|... - gi\|56414808\|ref\|YP_151883.1\| hydrogenase assembly chaperone [Salmonella enterica subsp. enterica ser... gi\|213426149 - gi\|213426149\|ref\|ZP_03358899.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213419441 - gi\|213419441\|ref\|ZP_03352507.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213052190 - gi\|213052190\|ref\|ZP_03345068.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213028298 - gi\|213028298\|ref\|ZP_03342745.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213999444 - gi\|213999444\|ref\|ZP_03410179.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213982441 - gi\|213982441\|ref\|ZP_03409700.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213854933 - gi\|213854933\|ref\|ZP_03383173.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|213648123 - gi\|213648123\|ref\|ZP_03378176.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp.... gi\|16503934, gi\|... - gi\|25313740\|pir\|\|AD0847 hydrogenase isoenzymes formation protein HypC [imported] - Salmonella enteri... gi\|16761633 - gi\|16761633\|ref\|NP_457250.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp. en... gi\|16421402, gi\|... - gi\|16766162\|ref\|NP_461777.1\| hydrogenase isoenzymes formation protein [Salmonella typhimurium LT2], ... gi\|29138750, gi\|... - gi\|29143117\|ref\|NP_806459.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp. en... gi\|161365125, gi... - gi\|161615761\|ref\|YP_001589726.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp... gi\|161502099, gi... - gi\|161502099\|ref\|YP_001569211.1\| hydrogenase isoenzymes formation protein [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=hypC] [protein=hydrogenase isoenzymes formation protein] [protein_id=YP_005238962.1] [location... gi\|197290707, gi... - gi\|197290707\|gb\|EDY30061.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|205334448, gi... - gi\|205334448\|gb\|EDZ21212.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|167994162, gi... - gi\|205327925\|gb\|EDZ14689.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent... gi\|205324760, gi... - gi\|205324760\|gb\|EDZ12599.1\| hydrogenase assembly chaperone HypC/HupF [Salmonella enterica subsp. ent...	115.0	[0..1]	[90..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	114.0	[0..1]	[81..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	112.0	[0..1]	[81..1]
gi\|238727226, gi... - gi\|77978841\|ref\|ZP_00834265.1\| COG0298: Hydrogenase maturation factor [Yersinia intermedia ATCC 2990...	112.0	[0..1]	[85..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	110.0	[0..1]	[79..1]
gi\|78518017, gi\|... - gi\|78694901\|ref\|ZP_00859414.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Bradyrhizobium ...	110.0	[0..1]	[86..1]
gi\|77973827 - gi\|77973827\|ref\|ZP_00829371.1\| COG0298: Hydrogenase maturation factor [Yersinia frederiksenii ATCC 3...	109.0	[0..1]	[85..1]
gi\|77960130, gi\|... - gi\|77960130\|ref\|ZP_00824020.1\| COG0298: Hydrogenase maturation factor [Yersinia mollaretii ATCC 4396...	107.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIGVPGQIR TIDGNQAKVD VCGIQRDVDL TLVGSCDENG QPRVGQWVLV HVGFAMSVIN  60
   61 EAEARDTLDA LQNMFDVEPD VGALLYGEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2ot2A
Description:	No description for 2ot2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits