YRC Public Data Repository - Protein Structure Prediction

Protein:	HYPA_ECOLI
Organism:	Escherichia coli
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68525712, gi\|... - gi\|94310477\|ref\|YP_583687.1\| hydrogenase nickel insertion protein HypA [Ralstonia metallidurans CH34...	152.0	[0..1]	[113..1]
gi\|78693514, gi\|... - gi\|78693514\|ref\|ZP_00858028.1\| Hydrogenase expression/synthesis, HypA [Bradyrhizobium sp. BTAi1], gi...	150.0	[0..1]	[114..1]
HYPA_RHOP5 - Probable hydrogenase nickel incorporation protein HypA OS=Rhodopseudomonas palustris (strain BisA53)...	150.0	[0..1]	[114..1]
gi\|90425246, gi\|... - gi\|90425246\|ref\|YP_533616.1\| hydrogenase nickel insertion protein HypA [Rhodopseudomonas palustris B...	148.0	[0..1]	[114..1]
HYPA_RHOFT - Probable hydrogenase nickel incorporation protein HypA OS=Rhodoferax ferrireducens (strain ATCC BAA-...	148.0	[0..1]	[114..1]
gi\|289234, gi\|484408 - pir\|\|JN0646 hydrogenase expression/formation protein HupA - Azotobacter chroococcum, gi\|289234\|gb\|A... HYPA_AZOCH - Hydrogenase nickel incorporation protein HypA OS=Azotobacter chroococcum mcd 1 GN=hypA PE=3 SV=1	148.0	[0..1]	[114..1]
gi\|38637759, gi\|... - gi\|38637759\|ref\|NP_942733.1\| HypA2 [Ralstonia eutropha H16], gi\|32527097\|gb\|AAP85847.1\| HypA2 [Ralst... gi\|38637759, gi\|... - gi\|38637759\|ref\|NP_942733.1\| HypA2 [Cupriavidus necator], gi\|32527097\|gb\|AAP85847.1\| HypA2 [Ralstoni...	147.0	[0..1]	[113..1]
HYPA_AZOVI - Hydrogenase nickel incorporation protein HypA OS=Azotobacter vinelandii GN=hypA PE=3 SV=1 gi\|67157891, gi\|... - gi\|67157891\|ref\|ZP_00419036.1\| Hydrogenase expression/synthesis, HypA [Azotobacter vinelandii AvOP],...	145.0	[0..1]	[114..1]
gi\|23015666 - gi\|23015666\|ref\|ZP_00055435.1\| COG0375: Zn finger protein HypA/HybF (possibly regulating hydrogenase...	144.0	[0..1]	[114..1]
HYPA_RHOPS - Probable hydrogenase nickel incorporation protein HypA OS=Rhodopseudomonas palustris (strain BisB5) ...	143.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEITLCQRA LELIEQQAAK HGAKRVTGVW LKIGAFSCVE TSSLAFCFDL VCRGSVAEGC  60
   61 KLHLEEQEAE CWCETCQQYV TLLTQRVRRC PQCHGDMLQI VADDGLQIRR IEIDQE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	2gmgA
Description:	No description for 2gmgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits