YRC Public Data Repository - Protein Structure Prediction

Protein:	HYFJ_ECOLI
Organism:	Escherichia coli
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYFJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77973839 - gi\|77973839\|ref\|ZP_00829383.1\| COG1429: Cobalamin biosynthesis protein CobN and related Mg-chelatase...	225.0	[0..5]	[135..2]
gi\|1788835, gi\|4... - gi\|49176230\|ref\|NP_416985.3\| putative protein processing element for hydrogenase 4 [Escherichia coli... gi\|7449200 - gi\|7449200\|pir\|\|A65025 hypothetical protein b2490 - Escherichia coli (strain K-12)	223.0	[0..1]	[137..22]
gi\|73856493, gi\|... - gi\|74313016\|ref\|YP_311435.1\| putative protein processing element [Shigella sonnei Ss046], gi\|7385649...	222.0	[0..1]	[137..22]
gi\|77960141 - gi\|77960141\|ref\|ZP_00824031.1\| COG1429: Cobalamin biosynthesis protein CobN and related Mg-chelatase...	221.0	[0..5]	[135..2]
gi\|75237763, gi\|... - gi\|75237763\|ref\|ZP_00721779.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Esche... gi\|157081093, gi... - gi\|75187241\|ref\|ZP_00700508.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Esche...	220.0	[0..1]	[137..1]
gi\|56480117, gi\|... - gi\|56480117\|ref\|NP_708329.2\| putative protein processing element [Shigella flexneri 2a str. 301], gi... gi\|110615969, gi... - gi\|110806421\|ref\|YP_689941.1\| putative protein processing element [Shigella flexneri 5 str. 8401], g... gi\|30042121, gi\|... - gi\|30063866\|ref\|NP_838037.1\| putative protein processing element [Shigella flexneri 2a str. 2457T], ...	220.0	[0..1]	[137..22]
gi\|77978830 - gi\|77978830\|ref\|ZP_00834254.1\| hypothetical protein YintA_01001346 [Yersinia intermedia ATCC 29909]	220.0	[0..5]	[135..2]
gi\|209763608, gi... - pir\|\|D85892 hypothetical protein Z3750 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516875, gi\|... - gi\|15803013\|ref\|NP_289043.1\| putative protein processing element [Escherichia coli O157:H7 EDL933], ... gi\|15832606, gi\|... - gi\|15832606\|ref\|NP_311379.1\| putative protein processing element [Escherichia coli O157:H7], gi\|1336... gi\|15832606, gi\|... - gi\|15832606\|ref\|NP_311379.1\| putative protein processing element [Escherichia coli O157:H7 str. Saka...	219.0	[0..1]	[137..22]
gi\|253974365, gi... - gi\|254162464\|ref\|YP_003045572.1\| predicted processing element hydrogenase 4 [Escherichia coli B str.... gi\|75515831, gi\|... - gi\|75515831\|ref\|ZP_00737966.1\| COG0050: GTPases - translation elongation factors [Escherichia coli 5... gi\|75196498, gi\|... - gi\|75196498\|ref\|ZP_00706568.1\| COG0050: GTPases - translation elongation factors [Escherichia coli H... gi\|194437705, gi... - gi\|83586861\|ref\|ZP_00925492.1\| COG0050: GTPases - translation elongation factors [Escherichia coli 1... gi\|124499663, gi... - gi\|124529803\|ref\|ZP_01700680.1\| formate hydrogenlyase maturation HycH [Escherichia coli B], gi\|12449... gi\|169754154, gi... - gi\|170019226\|ref\|YP_001724180.1\| formate hydrogenlyase maturation HycH [Escherichia coli ATCC 8739],... gi\|254289225, gi... - gi\|254289225\|ref\|YP_003054973.1\| predicted processing element hydrogenase 4 [Escherichia coli BL21(D... gi\|251785815, gi... - gi\|251785815\|ref\|YP_003000119.1\| hypothetical protein B21_02344 [Escherichia coli BL21], gi\|24237808...	218.0	[0..1]	[136..1]
gi\|77958667 - gi\|77958667\|ref\|ZP_00822697.1\| COG1429: Cobalamin biosynthesis protein CobN and related Mg-chelatase...	218.0	[0..5]	[135..2]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEECGEIVF WTLRKKFVAS SDEMPEHSSQ VMYYSLAIGH HVGVIDCLNV AFRCPLTEYE  60
   61 DWLALVEEEQ ARRKMLGVMT FGEIVIDASH TALLTRAFAP LADDATSVWQ ARSIQFIHLL 120
  121 DEIVQEPAIY LMARKIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.958607
Match:	PF07450.2
Description:	No description for PF07450.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits