YRC Public Data Repository - Protein Structure Prediction

Protein:	HYFH_ECOLI
Organism:	Escherichia coli
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYFH_ECOLI.

Description	E-value	Query Range	Subject Range
NDS8A_ARATH - NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial OS=Arabidopsis thaliana GN=At...	128.0	[0..2]	[127..80]
gi\|668987, gi\|10... - gi\|668987\|emb\|CAA59063.1\| NADH dehydrogenase; NADH:ubiquinone oxidoreductase (complex I) [Solanum tu...	125.0	[0..2]	[127..87]
gi\|81246348, gi\|... - gi\|82544937\|ref\|YP_408884.1\| hydrogenase 4 subunit H [Shigella boydii Sb227], gi\|81246348\|gb\|ABB6705...	125.0	[0..1]	[181..1]
gi\|73856491, gi\|... - gi\|74313014\|ref\|YP_311433.1\| hydrogenase 4 subunit H [Shigella sonnei Ss046], gi\|73856491\|gb\|AAZ8919...	124.0	[0..1]	[181..1]
gi\|187430413, gi... - gi\|75178090\|ref\|ZP_00698149.1\| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreducta...	124.0	[0..1]	[181..1]
gi\|218696115, gi... - gi\|218696115\|ref\|YP_002403782.1\| hydrogenase 4 subunit H [Escherichia coli 55989], gi\|218352847\|emb\|... gi\|209919964, gi... - gi\|209919964\|ref\|YP_002294048.1\| hydrogenase 4 subunit H [Escherichia coli SE11], gi\|209913223\|dbj\|B... gi\|190900297, gi... - gi\|75226841\|ref\|ZP_00713752.1\| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreducta... gi\|218361782, gi... - gi\|218555014\|ref\|YP_002387927.1\| hydrogenase 4 subunit H [Escherichia coli IAI1], gi\|218361782\|emb\|C...	124.0	[0..1]	[181..1]
NDUS8_TOBAC - NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Nicotiana tabacum PE=2 SV=1	122.0	[0..2]	[127..88]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLLKTIMR AGTATVKYPF APLEVSPGFR GKPDLMPSQC IACGACACAC PANALTIQTD  60
   61 DQQNSRTWQL YLGRCIYCGR CEEVCPTRAI QLTNNFELTV TNKADLYTRA TFHLQRCSRC 120
  121 ERPFAPQKTI ALAAELLAQQ QNAPQNREML WAQASVCPEC KQRATLINDD TDVLLVAKEQ 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	2fug9
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits