YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HYFF_ECOLI
Organism: Escherichia coli
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYFF_ECOLI.

Description E-value Query
Range
Subject
Range
gi|5817414 - gi|5817414|gb|AAD52750.1|AF123692_1 NADH dehydrogenase [Tetranema mexicanum]
366.0 [0..3] [468..2]
gi|2605771, gi|7... - pir||T12227 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Retzia capensis chloroplast (fra...
365.0 [0..3] [468..10]
gi|62899393 - gi|62899393|gb|AAY18626.1| NADH dehydrogenase subunit F [Synapsis ilicifolia]
365.0 [0..3] [468..2]
gi|49523517 - gi|49523517|emb|CAE85004.1| NADH dehydrogenase [Ixianthes retzioides]
364.0 [0..3] [468..1]
gi|62899399 - gi|62899399|gb|AAY18629.1| NADH dehydrogenase subunit F [Thomandersia laurifolia]
364.0 [0..3] [468..2]
gi|6684547 - gi|6684547|gb|AAF23620.1| NADH dehydrogenase [Halleria lucida]
364.0 [0..3] [468..2]
gi|7520640, gi|2... - pir||T12225 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Stilbe albiflora chloroplast (fr...
362.0 [0..3] [468..10]
gi|81158530 - gi|81158530|gb|ABB55556.1| NADH dehydrogenase subunit F [Distictella elongata]
361.0 [0..3] [468..2]
gi|695288 - gi|695288|gb|AAA84038.1| NADH dehydrogenase subunit [Buddleja davidii]
361.0 [0..3] [468..2]

Back

Predicted Domain #1
Region A:
Residues: [1-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSVMFALL LLTPLLFSLL CFACRKRRLS ATRTVTVLHS LGITLLLILA LWVVQTAADA  60
   61 GEIFAAGLWL HIDGLGGLFL AILGVIGFLT GIYSIGYMRH EVAHGELSPV TLCDYYGFFH 120
  121 LFLFTMLLVV TSNNLIVMWA AIEATTLSSA FLVGIYGQRS SLEAAWKYII ICTVGVAFGL 180
  181 FGTVLVYANA ASVMPQAEMA IFWSEVLKQS SLLDPTLMLL AFVFLLIGFG TKTGLFPMHA 240
  241 WLPDAHSEAP SPVSALLSAV LLNCALLVLI RYYIIICQAI G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [282-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDFPNRLLLI FGMLSVAVAA FFILVQRDIK RLLAYSSVEN MGLVAVELGI GGPLGIFAAL  60
   61 LHILNHSLAK TLLFCGSGNV LLKYGTRDLN VVCGMLKIMP FTAVLFGGGA LALAGMPPFN 120
  121 IFLSEFMTIT AGLARNHLLI IVLLLLLLTL VLAGLVRMAA RVLMAKPPQA VNRGDLGWLT 180
  181 TSPMVILLVM MLAMGTHIPQ PVIRILAGAS TIVLSGTHDL PAQRSTWHDF LPSGTASVSE 240
  241 KHSER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle