YRC Public Data Repository - Protein Structure Prediction

Protein:	HYCD_ECOLI
Organism:	Escherichia coli
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|251765217, gi... - gi\|254033646\|ref\|YP_003058365.1\| NADH dehydrogenase subunit 1 [natural gynogenetic Carassius auratus... gi\|219565466, gi... - gi\|219565491\|dbj\|BAH04279.1\| NADH dehydrogenase subunit 1 [Carassius auratus auratus], gi\|219565486\|... gi\|219565496 - gi\|219565496\|dbj\|BAH04283.1\| NADH dehydrogenase subunit 1 [Carassius auratus gibelio] NU1M_CARAU - NADH-ubiquinone oxidoreductase chain 1 OS=Carassius auratus GN=MT-ND1 PE=3 SV=1 gi\|50657562, gi\|... - gi\|51235005\|ref\|YP_063495.1\| NADH dehydrogenase subunit 1 [Carassius auratus x Cyprinus carpio], gi\|... gi\|51339762, gi\|... - gi\|52221011\|ref\|YP_087031.1\| NADH dehydrogenase subunit 1 [Carassius carassius], gi\|51339762\|gb\|AAU0... gi\|189095543, gi... - gi\|189095543\|ref\|YP_001936250.1\| NADH dehydrogenase subunit 1 [Carassius cuvieri], gi\|13516938\|dbj\|B...	317.0	[0..3]	[307..9]
gi\|55338279, gi\|... - gi\|55338279\|ref\|YP_133893.1\| NADH dehydrogenase subunit 1 [Carassius auratus x Cyprinus carpio x Car...	316.0	[0..3]	[307..9]
gi\|56912168, gi\|... - gi\|56912168\|ref\|YP_173336.1\| NADH dehydrogenase subunit 1 [Carassius auratus auratus], gi\|56798129\|d...	316.0	[0..3]	[307..9]
gi\|84372074, gi\|... - gi\|86990418\|ref\|YP_492568.1\| NADH dehydrogenase subunit 1 [Coreoleuciscus splendidus], gi\|84372074\|g...	313.0	[0..3]	[307..9]
gi\|110238758 - gi\|110238758\|dbj\|BAE97649.1\| NADH dehydrogenase subunit 1 [Cyprinus carpio]	313.0	[0..3]	[307..9]
gi\|86990362, gi\|... - gi\|86990362\|ref\|YP_492594.1\| NADH dehydrogenase subunit 1 [Hemibarbus labeo], gi\|84372102\|gb\|ABC5639...	310.0	[0..3]	[307..9]
gi\|16265582 - gi\|16265582\|gb\|AAL16536.1\| NADH dehydrogenase subunit 1 [Gnatholepis cauerensis]	310.0	[0..3]	[305..9]
gi\|18874361 - gi\|18874361\|gb\|AAL78695.1\| NADH dehydrogenase subunit 1 [Evorthodus minutus]	310.0	[0..3]	[305..9]
gi\|18874365 - gi\|18874365\|gb\|AAL78697.1\| NADH dehydrogenase subunit 1 [Ctenogobius saepepallens]	310.0	[0..3]	[307..9]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLYPLIQA LVLFAVAPLL SGITRVARAR LHNRRGPGVL QEYRDIIKLL GRQSVGPDAS  60
   61 GWVFRLTPYV MVGVMLTIAT ALPVVTVGSP LPQLGDLITL LYLFAIARFF FAISGLDTG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPFTAIGASR EAMLGVLVEP MLLLGLWVAA QVAGSTNISN ITDTVYHWPL SQSIPLVLAL  60
   61 CACAFATFIE MGKLPFDL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [198-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEAEQELQEG PLSEYSGSGF GVMKWGISLK QLVVLQMFVG VFIPWGQMET FTAGGLLLAL  60
   61 VIAIVKLVVG VLVIALFENS MARLRLDITP RITWAGFGFA FLAFVSLLAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits