YRC Public Data Repository - Protein Structure Prediction

Protein:	HYCA_ECOLI
Organism:	Escherichia coli
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYCA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227888263, gi... - gi\|227888263\|ref\|ZP_04006068.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli 8397... gi\|215266113, gi... - gi\|215488041\|ref\|YP_002330472.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O12... gi\|218690849, gi... - gi\|218690849\|ref\|YP_002399061.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli ED1... gi\|75241669, gi\|... - gi\|75241669\|ref\|ZP_00725506.1\| hypothetical protein EcolF_01001376 [Escherichia coli F11], gi\|191171... gi\|26249124, gi\|... - gi\|26249124\|ref\|NP_755164.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli CFT073]...	295.0	[0..1]	[153..1]
gi\|187428667, gi... - gi\|75176414\|ref\|ZP_00696558.1\| hypothetical protein SboyB_01003644 [Shigella boydii BS512], gi\|18773... gi\|218559715, gi... - gi\|218559715\|ref\|YP_002392628.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli S88... gi\|237706651, gi... - gi\|237706651\|ref\|ZP_04537132.1\| formate hydrogenlyase regulatory protein HycA [Escherichia sp. 3_2_5... gi\|117624957, gi... - gi\|117624957\|ref\|YP_853945.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli APEC O... gi\|91212085, gi\|... - gi\|91212085\|ref\|YP_542071.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli UTI89],...	294.0	[0..1]	[153..1]
gi\|110344440, gi... - gi\|110642848\|ref\|YP_670578.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli 536], ...	293.0	[0..1]	[153..1]
gi\|251786008, gi... - gi\|251786008\|ref\|YP_003000312.1\| hypothetical protein B21_02540 [Escherichia coli BL21], gi\|24237828... gi\|194422055, gi... - gi\|83585616\|ref\|ZP_00924259.1\| hypothetical protein Ecol1_01003195 [Escherichia coli 101-1], gi\|1944... gi\|253974557, gi... - gi\|254162656\|ref\|YP_003045764.1\| regulator of the transcriptional regulator FhlA [Escherichia coli B... gi\|254289417, gi... - gi\|254289417\|ref\|YP_003055165.1\| regulator of the transcriptional regulator FhlA [Escherichia coli B...	293.0	[0..1]	[153..1]
gi\|74313292, gi\|... - gi\|74313292\|ref\|YP_311711.1\| formate hydrogenlyase regulatory protein HycA [Shigella sonnei Ss046], ...	293.0	[0..1]	[153..1]
gi\|81242239, gi\|... - gi\|82778091\|ref\|YP_404440.1\| formate hydrogenlyase regulatory protein HycA [Shigella dysenteriae Sd1...	293.0	[0..1]	[153..1]
gi\|197363733, gi... - gi\|197363733\|ref\|YP_002143370.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica ... gi\|194447480, gi... - gi\|194447480\|ref\|YP_002046815.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica ... gi\|213052193 - gi\|213052193\|ref\|ZP_03345071.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|62128989, gi\|... - gi\|62181356\|ref\|YP_217773.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica subs... gi\|198245051, gi... - gi\|198245051\|ref\|YP_002216825.1\| formate hydrogenlyase regulatory protein [Salmonella enterica subsp... gi\|56414805, gi\|... - gi\|56414805\|ref\|YP_151880.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica subs... gi\|167994158, gi... - gi\|205327942\|gb\|EDZ14706.1\| formate hydrogenlyase regulatory protein [Salmonella enterica subsp. ent... gi\|205349047, gi... - gi\|205349047\|gb\|EDZ35678.1\| formate hydrogenlyase regulatory protein [Salmonella enterica subsp. ent... gi\|205338054, gi... - gi\|205338054\|gb\|EDZ24818.1\| formate hydrogenlyase regulatory protein [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=hycA] [protein=formate hydrogenlyase regulatory protein HycA] [protein_id=YP_005238958.1] [loc... gi\|25333229, gi\|... - gi\|25333229\|pir\|\|AI0846 formate hydrogenlyase regulatory protein STY2975 [imported] - Salmonella ent... gi\|16766159, gi\|... - gi\|16766159\|ref\|NP_461774.1\| formate hydrogenlyase regulatory protein HycA [Salmonella typhimurium L... gi\|29138747, gi\|... - gi\|29143114\|ref\|NP_806456.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica subs... gi\|16761630 - gi\|16761630\|ref\|NP_457247.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica subs... gi\|213999447 - gi\|213999447\|ref\|ZP_03410182.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|213979951 - gi\|213979951\|ref\|ZP_03407210.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|224469158, gi... - gi\|224584631\|ref\|YP_002638429.1\| formate hydrogenlyase regulatory protein [Salmonella enterica subsp... gi\|213580305 - gi\|213580305\|ref\|ZP_03362131.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|213426146 - gi\|213426146\|ref\|ZP_03358896.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|213854930 - gi\|213854930\|ref\|ZP_03383170.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s... gi\|213648120 - gi\|213648120\|ref\|ZP_03378173.1\| formate hydrogenlyase regulatory protein HycA [Salmonella enterica s...	283.0	[0..1]	[152..1]
gi\|81246613, gi\|... - gi\|82545202\|ref\|YP_409149.1\| membrane-spanning protein of hydrogenase 3 [Shigella boydii Sb227], gi\|...	193.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIWEISEKA DYIAQRHRRL QDQWHIYCNS LVQGITLSKA RLHHAMSCAP DKELCFVLFE  60
   61 HFRIYVTLAD GFNSHTIEYY VETKDGEDKQ RIAQAQLSID GMIDGKVNIR DREQVLEHYL 120
  121 EKIAGVYDSL YTAIENNVPV NLSQLVKGQS PAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits