YRC Public Data Repository - Protein Structure Prediction

Protein:	HYBG_ECOLI
Organism:	Escherichia coli
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYBG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	111.0	[0..1]	[81..1]
gi\|46055, gi\|2126466 - gi\|46055\|emb\|CAA43328.1\| HypD [Rhodobacter capsulatus], pir\|\|S59984 hypD protein - Rhodobacter capsu...	108.0	[0..1]	[80..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	108.0	[0..1]	[81..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	108.0	[0..1]	[80..1]
gi\|150840672, gi... - gi\|75428698\|ref\|ZP_00731827.1\| hydrogenase maturation factor [Actinobacillus succinogenes 130Z], gi\|...	108.0	[0..1]	[81..1]
gi\|52426413, gi\|... - gi\|52426413\|ref\|YP_089550.1\| hydrogenase 2 accessory protein HypG [Mannheimia succiniciproducens MBE...	103.0	[0..1]	[81..1]
gi\|77973827 - gi\|77973827\|ref\|ZP_00829371.1\| COG0298: Hydrogenase maturation factor [Yersinia frederiksenii ATCC 3...	103.0	[0..1]	[81..1]
gi\|78518017, gi\|... - gi\|78694901\|ref\|ZP_00859414.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Bradyrhizobium ...	102.0	[0..1]	[81..1]
gi\|110165672, gi... - gi\|71676652\|ref\|ZP_00674393.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Trichodesmium e...	101.0	[0..1]	[80..1]
gi\|77958079 - gi\|77958079\|ref\|ZP_00822119.1\| COG0298: Hydrogenase maturation factor [Yersinia bercovieri ATCC 4397...	101.0	[0..1]	[79..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIGVPGQVL AVGEDIHQLA QVEVCGIKRD VNIALICEGN PADLLGQWVL VHVGFAMSII  60
   61 DEDEAKATLD ALRQMDYDIT SA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2z1cA
Description:	No description for 2z1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits