YRC Public Data Repository - Protein Structure Prediction

Protein:	HYBE_ECOLI
Organism:	Escherichia coli
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYBE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81242387, gi\|... - gi\|82778239\|ref\|YP_404588.1\| hydrogenase 2-specific chaperone [Shigella dysenteriae Sd197], gi\|81242...	229.0	[0..1]	[162..1]
gi\|157068152, gi... - gi\|75196956\|ref\|ZP_00707026.1\| hypothetical protein EcolH_01002768 [Escherichia coli HS], gi\|1571624...	228.0	[0..1]	[162..1]
gi\|110616443, gi... - gi\|110806895\|ref\|YP_690415.1\| hydrogenase 2-specific chaperone [Shigella flexneri 5 str. 8401], gi\|1... gi\|30064347, gi\|... - gi\|30064347\|ref\|NP_838518.1\| hydrogenase 2-specific chaperone [Shigella flexneri 2a str. 2457T], gi\|... gi\|24053457, gi\|... - gi\|24114300\|ref\|NP_708810.1\| hydrogenase 2-specific chaperone [Shigella flexneri 2a str. 301], gi\|24...	228.0	[0..1]	[162..1]
gi\|190907246, gi... - gi\|75240552\|ref\|ZP_00724480.1\| hypothetical protein EcolF_01002478 [Escherichia coli F11], gi\|191172... gi\|226899301, gi... - gi\|237706261\|ref\|ZP_04536742.1\| hydrogenase-2 operon protein HybE [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91212406, gi\|... - gi\|91212406\|ref\|YP_542392.1\| hydrogenase 2-specific chaperone [Escherichia coli UTI89], gi\|91073980\|... gi\|115514421, gi... - gi\|117625297\|ref\|YP_854469.1\| hydrogenase 2-specific chaperone [Escherichia coli APEC O1], gi\|115514... gi\|218366836, gi... - gi\|218560067\|ref\|YP_002392980.1\| hydrogenase 2-specific chaperone [Escherichia coli S88], gi\|2183668...	228.0	[0..1]	[162..1]
gi\|544487 - gi\|544487\|gb\|AAA21593.1\| hybE	227.0	[0..1]	[162..1]
gi\|110643232, gi... - gi\|110643232\|ref\|YP_670962.1\| hydrogenase 2-specific chaperone [Escherichia coli 536], gi\|110344824\|...	225.0	[0..1]	[162..1]
gi\|238909945 - gi\|238909945\|ref\|ZP_04653782.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|62129289, gi\|... - gi\|62181656\|ref\|YP_218073.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|56129343, gi\|... - gi\|56415086\|ref\|YP_152161.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|29139044, gi\|... - gi\|29143410\|ref\|NP_806752.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|194470151, gi... - gi\|194470151\|ref\|ZP_03076135.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|16761923 - gi\|16761923\|ref\|NP_457540.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|205343379, gi... - gi\|205343379\|gb\|EDZ30143.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|168463654, gi... - gi\|195633299\|gb\|EDX51713.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|25513400, gi\|... - gi\|25513400\|pir\|\|AI0884 hydrogenase-2 component protein [imported] - Salmonella enterica subsp. ente... gi\|197288967, gi... - gi\|197288967\|gb\|EDY28338.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|204322329, gi... - gi\|204928007\|ref\|ZP_03219207.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|197095492, gi... - gi\|197364015\|ref\|YP_002143652.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteri... gi\|197215257, gi... - gi\|197251554\|ref\|YP_002148066.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|194711127, gi... - gi\|194735625\|ref\|YP_002116100.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|205333804, gi... - gi\|205333804\|gb\|EDZ20568.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|205323344, gi... - gi\|205323344\|gb\|EDZ11183.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|161365489, gi... - gi\|161616125\|ref\|YP_001590090.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteri... gi\|213621375 - gi\|213621375\|ref\|ZP_03374158.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213424817 - gi\|213424817\|ref\|ZP_03357567.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213418351 - gi\|213418351\|ref\|ZP_03351417.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213161311 - gi\|213161311\|ref\|ZP_03347021.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|224584941, gi... - gi\|224584941\|ref\|YP_002638740.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|214000553 - gi\|214000553\|ref\|ZP_03411288.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213854527 - gi\|213854527\|ref\|ZP_03382767.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213648650 - gi\|213648650\|ref\|ZP_03378703.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric...	225.0	[0..1]	[162..1]
gi\|168753956, gi... - gi\|189358611\|gb\|EDU77030.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4401]... gi\|168747503, gi... - gi\|188017836\|gb\|EDU55958.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4113]... gi\|168781863, gi... - gi\|189000606\|gb\|EDU69592.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4076]... gi\|15833131, gi\|... - gi\|15833131\|ref\|NP_311904.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. Sakai],... gi\|168773356, gi... - gi\|187770912\|gb\|EDU34756.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4196]... gi\|189363801, gi... - gi\|189363801\|gb\|EDU82220.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4486]... gi\|168760147, gi... - gi\|189369228\|gb\|EDU87644.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4501]... gi\|254594349, gi... - gi\|254794949\|ref\|YP_003079786.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. TW1... HYBE_ECO57 - Hydrogenase-2 operon protein HybE OS=Escherichia coli O157:H7 GN=hybE PE=3 SV=1 gi\|208727487, gi... - gi\|208807686\|ref\|ZP_03250023.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|195937138 - gi\|195937138\|ref\|ZP_03082520.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. EC40... gi\|12517556, gi\|... - gi\|15803537\|ref\|NP_289570.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|189379799, gi... - gi\|189379799\|gb\|EDU98215.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC508],... gi\|25391406, gi\|... - pir\|\|E85958 member of hyb operon [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|189374124, gi... - gi\|189374124\|gb\|EDU92540.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC869],... gi\|217319458, gi... - gi\|217327091\|ref\|ZP_03443174.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. TW1... gi\|209157699, gi... - gi\|209396299\|ref\|YP_002272471.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC... gi\|208821024, gi... - gi\|208821024\|ref\|ZP_03261344.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|208814480, gi... - gi\|208814480\|ref\|ZP_03255809.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4...	225.0	[0..1]	[162..1]
gi\|16421699, gi\|... - gi\|16766445\|ref\|NP_462060.1\| hydrogenase 2-specific chaperone [Salmonella typhimurium LT2], gi\|16421... lcl\|NC_016856.1_... - [gene=hybE] [protein=hydrogenase 2-specific chaperone] [protein_id=YP_005239308.1] [location=complem... gi\|194402589, gi... - gi\|194443926\|ref\|YP_002042409.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|200386813, gi... - gi\|200386813\|ref\|ZP_03213425.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|205331269, gi... - gi\|205331269\|gb\|EDZ18033.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser...	224.0	[0..1]	[162..1]
gi\|77958082 - gi\|77958082\|ref\|ZP_00822122.1\| COG0046: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetas...	214.0	[0..1]	[162..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEIAGFQT SPKAQVQAAF EEIARRSMHD LSFLHPSMPV YVSDFTLFEG QWTGCVITPW  60
   61 MLSAVIFPGP DQLWPLRKVS EKIGLQLPYG TMTFTVGELD GVSQYLSCSL MSPLSHSMSI 120
  121 EEGQRLTDDC ARMILSLPVT NPDVPHAGRR ALLFGRRSGE NA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits