YRC Public Data Repository - Protein Structure Prediction

Protein:	HYBB_ECOLI
Organism:	Escherichia coli
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYBB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83855682, gi\|... - gi\|83855682\|ref\|ZP_00949211.1\| molybdopterin oxidoredutase membrane subunit [Croceibacter atlanticus...	245.0	[0..1]	[390..25]
gi\|56129346, gi\|... - gi\|56415089\|ref\|YP_152164.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica subsp.... gi\|205273847, gi... - gi\|205354066\|ref\|YP_002227867.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica su... gi\|207858407, gi... - gi\|207858407\|ref\|YP_002245058.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica su... gi\|197940006, gi... - gi\|198245490\|ref\|YP_002217125.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica ... gi\|200387088, gi... - gi\|200387088\|ref\|ZP_03213700.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica s... gi\|16766448, gi\|... - gi\|16766448\|ref\|NP_462063.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella typhimurium LT2... gi\|197242848, gi... - gi\|197264593\|ref\|ZP_03164667.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica s... gi\|197095495, gi... - gi\|197364018\|ref\|YP_002143655.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica su... gi\|194737021, gi... - gi\|194737021\|ref\|YP_002116103.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica ... gi\|197250314, gi... - gi\|197250314\|ref\|YP_002148069.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica ... gi\|194449586, gi... - gi\|194449586\|ref\|YP_002047143.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica su... gi\|194459339, gi... - gi\|194472975\|ref\|ZP_03078959.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica s... gi\|168819797, gi... - gi\|205343461\|gb\|EDZ30225.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subs... gi\|194402287, gi... - gi\|194443624\|ref\|YP_002042412.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica ... lcl\|NC_016856.1_... - [gene=hybB] [protein=putative hydrogenase 2 b cytochrome subunit] [protein_id=YP_005239311.1] [locat... gi\|205348564, gi... - gi\|205348564\|gb\|EDZ35195.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|168463651, gi... - gi\|195633216\|gb\|EDX51630.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|168238100, gi... - gi\|197289045\|gb\|EDY28416.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|168242967, gi... - gi\|205337916\|gb\|EDZ24680.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|205331219, gi... - gi\|205331219\|gb\|EDZ17983.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|205333727, gi... - gi\|205333727\|gb\|EDZ20491.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|161365492, gi... - gi\|161616128\|ref\|YP_001590093.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica su... gi\|205323353, gi... - gi\|205323353\|gb\|EDZ11192.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Salmonella enterica subsp... gi\|238909948 - gi\|238909948\|ref\|ZP_04653785.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub...	239.0	[0..1]	[392..1]
gi\|62129292, gi\|... - gi\|62181659\|ref\|YP_218076.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica subsp.... gi\|16761926 - gi\|16761926\|ref\|NP_457543.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica subsp.... gi\|213424814 - gi\|213424814\|ref\|ZP_03357564.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub... gi\|213161308 - gi\|213161308\|ref\|ZP_03347018.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub... gi\|16504228, gi\|... - gi\|25512330\|pir\|\|AD0885 probable hydrogenase-2 cytochrome b chain [imported] - Salmonella enterica s... gi\|29139047, gi\|... - gi\|29143413\|ref\|NP_806755.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica subsp.... gi\|214000551 - gi\|214000551\|ref\|ZP_03411286.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub... gi\|213854525 - gi\|213854525\|ref\|ZP_03382765.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub... gi\|213648647 - gi\|213648647\|ref\|ZP_03378700.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub... gi\|213618585 - gi\|213618585\|ref\|ZP_03372411.1\| putative hydrogenase 2 b cytochrome subunit [Salmonella enterica sub...	238.0	[0..1]	[392..1]
gi\|24114303, gi\|... - gi\|24114303\|ref\|NP_708813.1\| putative hydrogenase 2 b cytochrome subunit [Shigella flexneri 2a str. ... gi\|30042607, gi\|... - gi\|30064350\|ref\|NP_838521.1\| putative hydrogenase 2 b cytochrome subunit [Shigella flexneri 2a str. ... gi\|110616446, gi... - gi\|110806898\|ref\|YP_690418.1\| putative hydrogenase 2 b cytochrome subunit [Shigella flexneri 5 str. ...	237.0	[0..1]	[392..1]
gi\|26249563, gi\|... - gi\|26249563\|ref\|NP_755603.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli CFT073], ... gi\|75259941, gi\|... - gi\|75259941\|ref\|ZP_00731219.1\| COG5557: Polysulphide reductase [Escherichia coli E22], gi\|193062183\|... gi\|73857017, gi\|... - gi\|74313540\|ref\|YP_311959.1\| putative hydrogenase 2 b cytochrome subunit [Shigella sonnei Ss046], gi... gi\|191167566, gi... - gi\|75229318\|ref\|ZP_00715877.1\| COG5557: Polysulphide reductase [Escherichia coli B7A], gi\|191167566\|... gi\|193067291, gi... - gi\|75239421\|ref\|ZP_00723392.1\| COG5557: Polysulphide reductase [Escherichia coli E110019], gi\|193067... gi\|218555569, gi... - gi\|218555569\|ref\|YP_002388482.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli IAI1]... gi\|218701769, gi... - gi\|218701769\|ref\|YP_002409398.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli IAI39... gi\|218691286, gi... - gi\|218691286\|ref\|YP_002399498.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli ED1a]... gi\|157080701, gi... - gi\|75187818\|ref\|ZP_00701085.1\| COG5557: Polysulphide reductase [Escherichia coli E24377A], gi\|157158... gi\|194426179, gi... - gi\|75212359\|ref\|ZP_00712383.1\| COG5557: Polysulphide reductase [Escherichia coli B171], gi\|194426179... gi\|254038164, gi... - gi\|254038164\|ref\|ZP_04872222.1\| hydrogenase 2 cytochrome b type component [Escherichia sp. 1_1_43], ... gi\|187429952, gi... - gi\|75178894\|ref\|ZP_00698930.1\| COG5557: Polysulphide reductase [Shigella boydii BS512], gi\|187732960...	236.0	[0..1]	[392..1]
gi\|91212409, gi\|... - gi\|91212409\|ref\|YP_542395.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli UTI89], g... gi\|215266393, gi... - gi\|215488321\|ref\|YP_002330752.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli O127:... gi\|218560070, gi... - gi\|218560070\|ref\|YP_002392983.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli S88],... gi\|117625300, gi... - gi\|117625300\|ref\|YP_854501.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli APEC O1]... gi\|191172475, gi... - gi\|75240549\|ref\|ZP_00724477.1\| COG5557: Polysulphide reductase [Escherichia coli F11], gi\|191172475\|... gi\|237706258, gi... - gi\|237706258\|ref\|ZP_04536739.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227887702, gi... - gi\|227887702\|ref\|ZP_04005507.1\| hydrogenase 2 b cytochrome subunit [Escherichia coli 83972], gi\|2278...	236.0	[0..1]	[392..1]
gi\|81246678, gi\|... - gi\|82545267\|ref\|YP_409214.1\| putative hydrogenase 2 b cytochrome subunit [Shigella boydii Sb227], gi...	235.0	[0..1]	[392..1]
gi\|544484 - gi\|544484\|gb\|AAA21590.1\| hybB	235.0	[0..1]	[392..1]
gi\|13363352, gi\|... - gi\|15833134\|ref\|NP_311907.1\| putative cytochrome Ni/Fe component of hydrogenase-2 [Escherichia coli ... gi\|13363352, gi\|... - gi\|15833134\|ref\|NP_311907.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli O157:H7 s... gi\|25391407, gi\|... - pir\|\|H85958 hypothetical protein hybB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189369448, gi... - gi\|189369448\|gb\|EDU87864.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Escherichia coli O157:H7 ... gi\|217327822, gi... - gi\|217327822\|ref\|ZP_03443905.1\| Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Escherichia coli O157... gi\|15803540, gi\|... - gi\|15803540\|ref\|NP_289573.1\| putative hydrogenase 2 b cytochrome subunit [Escherichia coli O157:H7 E...	235.0	[0..1]	[392..1]
gi\|86131980, gi\|... - gi\|86131980\|ref\|ZP_01050576.1\| molybdopterin oxidoredutase membrane subunit [Cellulophaga sp. MED134...	233.0	[0..1]	[390..26]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDPQPLGG KIISKPVMIF GPLIVICMLL IVKRLVFGLG SVSDLNGGFP WGVWIAFDLL  60
   61 IGTGFACGGW ALAWAVYVFN RGQYHPLVRP ALLASLFGYS LGGLSITIDV GRYWNLPYFY 120
  121 IPGHFNVNSV LFETAVCMTI YIGVMALEFA PALFERLGWK VSLQRLNKVM FFIIALGALL 180
  181 PTMHQSSMGS LMISAGYKVH PLWQSYEMLP LFSLLTAFIM GFSIVIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGSLVQAGLR GNGPDEKSLF VKLTNTISVL LAIFIVLRFG ELIYRDKLSL AFAGDFYSVM  60
   61 FWIEVLLMLF PLVVLRVAKL RNDSRMLFLS ALSALLGCAT WRLTYSLVAF NPGGGYAYFP 120
  121 TWEELLISIG FVAIEICAYI VLIRLLPILP PLKQNDHNRH EASKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits