YRC Public Data Repository - Protein Structure Prediction

Protein:	HOLE_ECOLI
Organism:	Escherichia coli
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOLE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26248106, gi\|... - gi\|26248106\|ref\|NP_754146.1\| DNA polymerase III, theta subunit [Escherichia coli CFT073], gi\|2610850... gi\|24052188, gi\|... - ref\|NP_707705.1\| DNA polymerase III theta subunit [Shigella flexneri 2a str. 301], gb\|AAN43412.1\| D... gi\|237705794, gi... - gi\|237705794\|ref\|ZP_04536275.1\| DNA polymerase III theta subunit [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110343552, gi... - gi\|110641960\|ref\|YP_669690.1\| DNA polymerase III subunit theta [Escherichia coli 536], gi\|110343552\|... gi\|91211065, gi\|... - gi\|91211065\|ref\|YP_541051.1\| DNA polymerase III theta subunit [Escherichia coli UTI89], gi\|91072639\|...	130.0	[0..1]	[76..30]
gi\|50121400, gi\|... - gi\|50121400\|ref\|YP_050567.1\| DNA polymerase III subunit theta [Pectobacterium atrosepticum SCRI1043]...	129.0	[0..1]	[76..1]
gi\|110615335, gi... - gi\|110805787\|ref\|YP_689307.1\| DNA polymerase III subunit theta [Shigella flexneri 5 str. 8401], gi\|1...	127.0	[0..1]	[76..1]
gi\|75175679, gi\|... - gi\|75175679\|ref\|ZP_00695885.1\| hypothetical protein SboyB_01004275 [Shigella boydii BS512], gi\|18773... gi\|81245074, gi\|... - gi\|82543663\|ref\|YP_407610.1\| DNA polymerase III subunit theta [Shigella boydii Sb227], gi\|81245074\|g...	127.0	[0..1]	[76..1]
gi\|36786013, gi\|... - gi\|37526581\|ref\|NP_929925.1\| DNA polymerase III subunit theta [Photorhabdus luminescens subsp. laumo...	126.0	[0..1]	[76..1]
gi\|8569331 - gi\|8569331\|pdb\|1DU2\|A Chain A, Solution Structure Of The Theta Subunit Of Dna Polymerase Iii	126.0	[0..2]	[76..2]
gi\|238789014, gi... - gi\|77972298\|ref\|ZP_00827868.1\| hypothetical protein YfreA_01003904 [Yersinia frederiksenii ATCC 3364...	126.0	[0..1]	[76..1]
gi\|238791778, gi... - gi\|77980076\|ref\|ZP_00835491.1\| hypothetical protein YintA_01000124 [Yersinia intermedia ATCC 29909],...	125.0	[0..1]	[76..1]
gi\|238715695, gi... - gi\|77959091\|ref\|ZP_00823114.1\| hypothetical protein YberA_01000636 [Yersinia bercovieri ATCC 43970],...	125.0	[0..1]	[76..1]
gi\|77961571, gi\|... - gi\|77961571\|ref\|ZP_00825405.1\| hypothetical protein YmolA_01002151 [Yersinia mollaretii ATCC 43969],...	124.0	[0..1]	[76..1]

Back

Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKNLAKLDQ TEMDKVNVDL AAAGVAFKER YNMPVIAEAV EREQPEHLRS WFRERLIAHR  60
   61 LASVNLSRLP YEPKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	1du2A
Description:	Theta subunit of DNA polymerase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits